miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12972 5' -56.5 NC_003387.1 + 42062 0.66 0.651274
Target:  5'- -cGCGG-CGUguaCGAccuGGCGCGCGUg- -3'
miRNA:   3'- gaCGCCaGCAac-GCU---CCGCGCGUAac -5'
12972 5' -56.5 NC_003387.1 + 18184 0.66 0.651274
Target:  5'- gCUGaCGaUCGgcUGCGAGGUGCGCc--- -3'
miRNA:   3'- -GAC-GCcAGCa-ACGCUCCGCGCGuaac -5'
12972 5' -56.5 NC_003387.1 + 43212 0.66 0.640286
Target:  5'- -cGCGG-CGaucgGCGAGGUGaCGCAc-- -3'
miRNA:   3'- gaCGCCaGCaa--CGCUCCGC-GCGUaac -5'
12972 5' -56.5 NC_003387.1 + 36092 0.66 0.629291
Target:  5'- aUGCGGUCaaucuCGAacagGGCGCGCGUg- -3'
miRNA:   3'- gACGCCAGcaac-GCU----CCGCGCGUAac -5'
12972 5' -56.5 NC_003387.1 + 20772 0.66 0.618299
Target:  5'- uUGCGGcCGgggaUGCGAccGGCGCGgAUc- -3'
miRNA:   3'- gACGCCaGCa---ACGCU--CCGCGCgUAac -5'
12972 5' -56.5 NC_003387.1 + 32531 0.66 0.607319
Target:  5'- --cCGGcCG-UGCGAGGCGCaGCAg-- -3'
miRNA:   3'- gacGCCaGCaACGCUCCGCG-CGUaac -5'
12972 5' -56.5 NC_003387.1 + 14936 0.66 0.59636
Target:  5'- -cGCGGgUGcUGCGcccAGGCGCGC-UUGa -3'
miRNA:   3'- gaCGCCaGCaACGC---UCCGCGCGuAAC- -5'
12972 5' -56.5 NC_003387.1 + 48169 0.67 0.585431
Target:  5'- -cGCGGUCGcgcagGCGcAGGCcCGCAa-- -3'
miRNA:   3'- gaCGCCAGCaa---CGC-UCCGcGCGUaac -5'
12972 5' -56.5 NC_003387.1 + 14181 0.67 0.574541
Target:  5'- -cGCGGgCGUgaggGCGucgugauGGCGCGCGa-- -3'
miRNA:   3'- gaCGCCaGCAa---CGCu------CCGCGCGUaac -5'
12972 5' -56.5 NC_003387.1 + 51764 0.67 0.563698
Target:  5'- uCUGCGGcCG-UGCGGguccGGUGCGCcgUc -3'
miRNA:   3'- -GACGCCaGCaACGCU----CCGCGCGuaAc -5'
12972 5' -56.5 NC_003387.1 + 4145 0.67 0.552911
Target:  5'- uUG-GGUCG--GCGAGGCGgGCGUc- -3'
miRNA:   3'- gACgCCAGCaaCGCUCCGCgCGUAac -5'
12972 5' -56.5 NC_003387.1 + 37276 0.67 0.552911
Target:  5'- -gGCGGUCaagGCGccuGGCGCGCu--- -3'
miRNA:   3'- gaCGCCAGcaaCGCu--CCGCGCGuaac -5'
12972 5' -56.5 NC_003387.1 + 4045 0.67 0.549686
Target:  5'- gUGCGGUgGgUGCGAuacgccucggucacGGCGUGCGg-- -3'
miRNA:   3'- gACGCCAgCaACGCU--------------CCGCGCGUaac -5'
12972 5' -56.5 NC_003387.1 + 22429 0.67 0.542186
Target:  5'- aUGCGcGUCGUcccagGCGcGGGCcGCgGCGUUGg -3'
miRNA:   3'- gACGC-CAGCAa----CGC-UCCG-CG-CGUAAC- -5'
12972 5' -56.5 NC_003387.1 + 4110 0.69 0.449548
Target:  5'- uUGUGGUgGUUGUGAGGUGgGUu--- -3'
miRNA:   3'- gACGCCAgCAACGCUCCGCgCGuaac -5'
12972 5' -56.5 NC_003387.1 + 22182 0.7 0.383875
Target:  5'- -gGCGGUCcaUGuCGGGGCGCcCGUUGc -3'
miRNA:   3'- gaCGCCAGcaAC-GCUCCGCGcGUAAC- -5'
12972 5' -56.5 NC_003387.1 + 46150 0.71 0.33208
Target:  5'- -cGCGGUCGUcguucuaUGUGuuGGUGCGCcgUGu -3'
miRNA:   3'- gaCGCCAGCA-------ACGCu-CCGCGCGuaAC- -5'
12972 5' -56.5 NC_003387.1 + 52222 0.75 0.189195
Target:  5'- -cGCGGUCGccacGCG-GGCGCGCAUc- -3'
miRNA:   3'- gaCGCCAGCaa--CGCuCCGCGCGUAac -5'
12972 5' -56.5 NC_003387.1 + 39925 1.08 0.000832
Target:  5'- aCUGCGGUCGUUGCGAGGCGCGCAUUGc -3'
miRNA:   3'- -GACGCCAGCAACGCUCCGCGCGUAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.