miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12973 3' -52 NC_003387.1 + 33590 0.67 0.791178
Target:  5'- cGUGCGCGACGAagauCCCGCcgaGGUg--- -3'
miRNA:   3'- -CGCGUGCUGCUaau-GGGCG---UCAagau -5'
12973 3' -52 NC_003387.1 + 49798 0.68 0.781024
Target:  5'- gGCGCAguuCGACGAgagccucGCCCGCGGc-CUGc -3'
miRNA:   3'- -CGCGU---GCUGCUaa-----UGGGCGUCaaGAU- -5'
12973 3' -52 NC_003387.1 + 34574 0.68 0.781024
Target:  5'- cGgGCcgAUGACgGGUUACCCGCGGUg--- -3'
miRNA:   3'- -CgCG--UGCUG-CUAAUGGGCGUCAagau -5'
12973 3' -52 NC_003387.1 + 48731 0.68 0.770706
Target:  5'- uGCGcCGCGACGAguccaugACCgCGCGGgUCg- -3'
miRNA:   3'- -CGC-GUGCUGCUaa-----UGG-GCGUCaAGau -5'
12973 3' -52 NC_003387.1 + 12658 0.68 0.760237
Target:  5'- uGCGCugGGCGAcaGCgugaUGCAGUUCc- -3'
miRNA:   3'- -CGCGugCUGCUaaUGg---GCGUCAAGau -5'
12973 3' -52 NC_003387.1 + 23391 0.68 0.746421
Target:  5'- aGCGCGCGGCGGcuuucagcgcggccUggcgcucgUGCCCGCGG-UCg- -3'
miRNA:   3'- -CGCGUGCUGCU--------------A--------AUGGGCGUCaAGau -5'
12973 3' -52 NC_003387.1 + 47605 0.68 0.738894
Target:  5'- cGCGUGCGGCGAUcaGCUCGCuGUUa-- -3'
miRNA:   3'- -CGCGUGCUGCUAa-UGGGCGuCAAgau -5'
12973 3' -52 NC_003387.1 + 5826 0.69 0.728046
Target:  5'- cGUGCACGACGAccucgggcUGCgCCGCAGg---- -3'
miRNA:   3'- -CGCGUGCUGCUa-------AUG-GGCGUCaagau -5'
12973 3' -52 NC_003387.1 + 6584 0.69 0.717096
Target:  5'- cGCGaCGCGaACGGcaACCCGguGUUCc- -3'
miRNA:   3'- -CGC-GUGC-UGCUaaUGGGCguCAAGau -5'
12973 3' -52 NC_003387.1 + 15098 0.69 0.706057
Target:  5'- uGCG-GCGGCGAUUACCUcgGCAGUg--- -3'
miRNA:   3'- -CGCgUGCUGCUAAUGGG--CGUCAagau -5'
12973 3' -52 NC_003387.1 + 15323 0.7 0.672531
Target:  5'- uGCGCgGCGACGAcugGCUCGUcgAGUUCa- -3'
miRNA:   3'- -CGCG-UGCUGCUaa-UGGGCG--UCAAGau -5'
12973 3' -52 NC_003387.1 + 25597 0.7 0.63864
Target:  5'- cGgGCACGGCcucgACCCGCAGUgccUCg- -3'
miRNA:   3'- -CgCGUGCUGcuaaUGGGCGUCA---AGau -5'
12973 3' -52 NC_003387.1 + 1280 0.7 0.627316
Target:  5'- gGCuGCGCGGCGuucgACCggCGCAGUUCg- -3'
miRNA:   3'- -CG-CGUGCUGCuaa-UGG--GCGUCAAGau -5'
12973 3' -52 NC_003387.1 + 46005 0.7 0.627316
Target:  5'- gGCGaguCGACGGUgaacUGCCCGCGGUg--- -3'
miRNA:   3'- -CGCgu-GCUGCUA----AUGGGCGUCAagau -5'
12973 3' -52 NC_003387.1 + 32981 0.71 0.582166
Target:  5'- cCGCGCGACuacgUGCCCGC-GUUCg- -3'
miRNA:   3'- cGCGUGCUGcua-AUGGGCGuCAAGau -5'
12973 3' -52 NC_003387.1 + 4848 0.73 0.494483
Target:  5'- cGUGCACGcCGAgauggcgGCCgaGCAGUUCUGg -3'
miRNA:   3'- -CGCGUGCuGCUaa-----UGGg-CGUCAAGAU- -5'
12973 3' -52 NC_003387.1 + 43958 0.76 0.338353
Target:  5'- cCGCACGGCGAagGCCCGCauggcgaagcugacGGUUCa- -3'
miRNA:   3'- cGCGUGCUGCUaaUGGGCG--------------UCAAGau -5'
12973 3' -52 NC_003387.1 + 13249 0.76 0.315396
Target:  5'- uGCGCAUGGCGAUUucccaccgcGCCCGCucguacaGGUUCg- -3'
miRNA:   3'- -CGCGUGCUGCUAA---------UGGGCG-------UCAAGau -5'
12973 3' -52 NC_003387.1 + 39977 1.09 0.001905
Target:  5'- cGCGCACGACGAUUACCCGCAGUUCUAc -3'
miRNA:   3'- -CGCGUGCUGCUAAUGGGCGUCAAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.