miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12973 5' -64 NC_003387.1 + 5560 0.66 0.319195
Target:  5'- aCC-AGGGCCaCCGCGGuGCccGCUauccacuUGCGCa -3'
miRNA:   3'- -GGaUCUCGG-GGCGCC-CG--CGA-------GCGCGc -5'
12973 5' -64 NC_003387.1 + 19889 0.66 0.312619
Target:  5'- aCCgccccGCCCCGCGGuGCGggCuGCGCu -3'
miRNA:   3'- -GGaucu-CGGGGCGCC-CGCgaG-CGCGc -5'
12973 5' -64 NC_003387.1 + 75 0.66 0.312619
Target:  5'- ----cGGCgCCGCGGGCGUUUGCugGCu -3'
miRNA:   3'- ggaucUCGgGGCGCCCGCGAGCG--CGc -5'
12973 5' -64 NC_003387.1 + 18857 0.66 0.305433
Target:  5'- aCCUGucGUCgCC-CGaGGCGCUCGuCGCGa -3'
miRNA:   3'- -GGAUcuCGG-GGcGC-CCGCGAGC-GCGC- -5'
12973 5' -64 NC_003387.1 + 8519 0.66 0.297676
Target:  5'- cCCUcGGGCCgaccggcUCGCGGGUaguuaguuGCcCGCGCGg -3'
miRNA:   3'- -GGAuCUCGG-------GGCGCCCG--------CGaGCGCGC- -5'
12973 5' -64 NC_003387.1 + 8411 0.66 0.291443
Target:  5'- --cGGGGCCUCGCcGGUGC--GCGCGa -3'
miRNA:   3'- ggaUCUCGGGGCGcCCGCGagCGCGC- -5'
12973 5' -64 NC_003387.1 + 49948 0.66 0.291443
Target:  5'- cCCU-GAGgCCCGCgaggacucgGGGCGUUUGUGUu -3'
miRNA:   3'- -GGAuCUCgGGGCG---------CCCGCGAGCGCGc -5'
12973 5' -64 NC_003387.1 + 34011 0.67 0.277959
Target:  5'- ---cGAGUgCCGCGcccuGGCGCU-GCGCGa -3'
miRNA:   3'- ggauCUCGgGGCGC----CCGCGAgCGCGC- -5'
12973 5' -64 NC_003387.1 + 9015 0.67 0.277959
Target:  5'- gCCgucGAGCaCCUgGCGGGCGC-CGUcgGCGa -3'
miRNA:   3'- -GGau-CUCG-GGG-CGCCCGCGaGCG--CGC- -5'
12973 5' -64 NC_003387.1 + 2773 0.67 0.277959
Target:  5'- gCCccGAGUCCuCGCGGGC-CUCaGgGCGu -3'
miRNA:   3'- -GGauCUCGGG-GCGCCCGcGAG-CgCGC- -5'
12973 5' -64 NC_003387.1 + 18515 0.67 0.271406
Target:  5'- cUCUcGGGCCgCCGCGguggcacgcaGGCGUUCGCGa- -3'
miRNA:   3'- -GGAuCUCGG-GGCGC----------CCGCGAGCGCgc -5'
12973 5' -64 NC_003387.1 + 1310 0.67 0.264978
Target:  5'- --aGGcGGCgCCGCaGGCGCUCGC-CGg -3'
miRNA:   3'- ggaUC-UCGgGGCGcCCGCGAGCGcGC- -5'
12973 5' -64 NC_003387.1 + 43772 0.67 0.264978
Target:  5'- ---uGAGCaCCUucauGCGGGCGC-CGUGCa -3'
miRNA:   3'- ggauCUCG-GGG----CGCCCGCGaGCGCGc -5'
12973 5' -64 NC_003387.1 + 25437 0.67 0.258673
Target:  5'- --aAGGGCCgCCaGUGcGGCGUucuccUCGCGCGa -3'
miRNA:   3'- ggaUCUCGG-GG-CGC-CCGCG-----AGCGCGC- -5'
12973 5' -64 NC_003387.1 + 50936 0.67 0.252492
Target:  5'- aCCUuGA-CCuuGCGGGCuuucaGCUCGgGCGc -3'
miRNA:   3'- -GGAuCUcGGggCGCCCG-----CGAGCgCGC- -5'
12973 5' -64 NC_003387.1 + 24591 0.67 0.252492
Target:  5'- uCgUGGGGCgCuuGCGGGC-CUCG-GCGa -3'
miRNA:   3'- -GgAUCUCG-GggCGCCCGcGAGCgCGC- -5'
12973 5' -64 NC_003387.1 + 52220 0.67 0.252492
Target:  5'- aCCgcGGucGCCaCGCGGGCGCgcaUCGCGaCGa -3'
miRNA:   3'- -GGauCU--CGGgGCGCCCGCG---AGCGC-GC- -5'
12973 5' -64 NC_003387.1 + 1758 0.67 0.246432
Target:  5'- gCUAucGgCUCGgGGGCGCUuCGCGCu -3'
miRNA:   3'- gGAUcuCgGGGCgCCCGCGA-GCGCGc -5'
12973 5' -64 NC_003387.1 + 12707 0.67 0.246432
Target:  5'- cCCgcgcGAGCgCCCGCGGG-GCUCuagGUGCc -3'
miRNA:   3'- -GGau--CUCG-GGGCGCCCgCGAG---CGCGc -5'
12973 5' -64 NC_003387.1 + 4919 0.67 0.246432
Target:  5'- gCUGcacuGCCCgGCGcGGCG-UCGCGCGu -3'
miRNA:   3'- gGAUcu--CGGGgCGC-CCGCgAGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.