miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12974 3' -54.1 NC_003387.1 + 30 0.67 0.722012
Target:  5'- --gGGGCAcccccccAgGGGUCGCUGACCUGc- -3'
miRNA:   3'- guaCCUGU-------UgUUCGGCGACUGGACcc -5'
12974 3' -54.1 NC_003387.1 + 2907 0.69 0.590344
Target:  5'- --cGGGCGcgGCAGGCCGCgGGCgaGGc -3'
miRNA:   3'- guaCCUGU--UGUUCGGCGaCUGgaCCc -5'
12974 3' -54.1 NC_003387.1 + 3279 0.74 0.309571
Target:  5'- aAUGGACGACGaccccgacacGGCCGCcGACUcGGGc -3'
miRNA:   3'- gUACCUGUUGU----------UCGGCGaCUGGaCCC- -5'
12974 3' -54.1 NC_003387.1 + 3867 0.66 0.775584
Target:  5'- --aGGGCGGCAAGCUGuUUGugCcGGa -3'
miRNA:   3'- guaCCUGUUGUUCGGC-GACugGaCCc -5'
12974 3' -54.1 NC_003387.1 + 11276 0.73 0.376326
Target:  5'- --aGGGCGGCGucagGGCCGCgccggUGACCUcGGGu -3'
miRNA:   3'- guaCCUGUUGU----UCGGCG-----ACUGGA-CCC- -5'
12974 3' -54.1 NC_003387.1 + 11776 0.68 0.646022
Target:  5'- --gGGGCGGCAucaaGGCCGCUGugCa--- -3'
miRNA:   3'- guaCCUGUUGU----UCGGCGACugGaccc -5'
12974 3' -54.1 NC_003387.1 + 12459 0.7 0.52479
Target:  5'- -cUGG-CGGCGgccuGGCCGCgGGCCUGGc -3'
miRNA:   3'- guACCuGUUGU----UCGGCGaCUGGACCc -5'
12974 3' -54.1 NC_003387.1 + 12828 0.68 0.623718
Target:  5'- --aGGGCGGCAAGCCGaagggcGGCgUGGa -3'
miRNA:   3'- guaCCUGUUGUUCGGCga----CUGgACCc -5'
12974 3' -54.1 NC_003387.1 + 12934 0.68 0.657159
Target:  5'- -cUGcGCAAuCAGGCCGCUGGCCUc-- -3'
miRNA:   3'- guACcUGUU-GUUCGGCGACUGGAccc -5'
12974 3' -54.1 NC_003387.1 + 13304 0.67 0.70136
Target:  5'- --aGGGCGGCGgccucgacGGCaGC-GACCUGGGc -3'
miRNA:   3'- guaCCUGUUGU--------UCGgCGaCUGGACCC- -5'
12974 3' -54.1 NC_003387.1 + 14823 0.67 0.679352
Target:  5'- --cGGGCAGCGGGUCGC---CCUcGGGg -3'
miRNA:   3'- guaCCUGUUGUUCGGCGacuGGA-CCC- -5'
12974 3' -54.1 NC_003387.1 + 22682 0.68 0.623718
Target:  5'- uCGUGGGCGgugucgACGGcGgCGCUGgcgGCCUGGGc -3'
miRNA:   3'- -GUACCUGU------UGUU-CgGCGAC---UGGACCC- -5'
12974 3' -54.1 NC_003387.1 + 23100 0.68 0.668273
Target:  5'- -cUGuACGGCAAGCCGCUGgcGCCcGGc -3'
miRNA:   3'- guACcUGUUGUUCGGCGAC--UGGaCCc -5'
12974 3' -54.1 NC_003387.1 + 24563 0.66 0.744451
Target:  5'- ----uACGGCGAGCCgaGCUGGCC-GGGc -3'
miRNA:   3'- guaccUGUUGUUCGG--CGACUGGaCCC- -5'
12974 3' -54.1 NC_003387.1 + 24814 0.66 0.751821
Target:  5'- -cUGGcGCAGCAgcucggcguacucgGGCgGCUGGCC-GGGc -3'
miRNA:   3'- guACC-UGUUGU--------------UCGgCGACUGGaCCC- -5'
12974 3' -54.1 NC_003387.1 + 24942 0.8 0.123779
Target:  5'- ---cGACGGCGGGCCGCcugaUGGCCUGGGu -3'
miRNA:   3'- guacCUGUUGUUCGGCG----ACUGGACCC- -5'
12974 3' -54.1 NC_003387.1 + 28787 0.68 0.668273
Target:  5'- gCAUGGGCAcugGCAcaCCGC-GGCgUGGGa -3'
miRNA:   3'- -GUACCUGU---UGUucGGCGaCUGgACCC- -5'
12974 3' -54.1 NC_003387.1 + 30102 0.73 0.358759
Target:  5'- --cGGGCGGCcaGGGCCGCcaagUGACCUuGGGc -3'
miRNA:   3'- guaCCUGUUG--UUCGGCG----ACUGGA-CCC- -5'
12974 3' -54.1 NC_003387.1 + 35715 0.69 0.568259
Target:  5'- ---cGACGGCcuGCCGCUGACCgagcUGGa -3'
miRNA:   3'- guacCUGUUGuuCGGCGACUGG----ACCc -5'
12974 3' -54.1 NC_003387.1 + 37749 0.69 0.557292
Target:  5'- ---cGACGGCAAGCUGCUcggcGACCUcaaGGGc -3'
miRNA:   3'- guacCUGUUGUUCGGCGA----CUGGA---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.