miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12974 3' -54.1 NC_003387.1 + 11776 0.68 0.646022
Target:  5'- --gGGGCGGCAucaaGGCCGCUGugCa--- -3'
miRNA:   3'- guaCCUGUUGU----UCGGCGACugGaccc -5'
12974 3' -54.1 NC_003387.1 + 3279 0.74 0.309571
Target:  5'- aAUGGACGACGaccccgacacGGCCGCcGACUcGGGc -3'
miRNA:   3'- gUACCUGUUGU----------UCGGCGaCUGGaCCC- -5'
12974 3' -54.1 NC_003387.1 + 12459 0.7 0.52479
Target:  5'- -cUGG-CGGCGgccuGGCCGCgGGCCUGGc -3'
miRNA:   3'- guACCuGUUGU----UCGGCGaCUGGACCc -5'
12974 3' -54.1 NC_003387.1 + 37749 0.69 0.557292
Target:  5'- ---cGACGGCAAGCUGCUcggcGACCUcaaGGGc -3'
miRNA:   3'- guacCUGUUGUUCGGCGA----CUGGA---CCC- -5'
12974 3' -54.1 NC_003387.1 + 52198 0.69 0.567159
Target:  5'- --aGGACGcugucgaGCAGGCCGCUGagcaGCCUGc- -3'
miRNA:   3'- guaCCUGU-------UGUUCGGCGAC----UGGACcc -5'
12974 3' -54.1 NC_003387.1 + 35715 0.69 0.568259
Target:  5'- ---cGACGGCcuGCCGCUGACCgagcUGGa -3'
miRNA:   3'- guacCUGUUGuuCGGCGACUGG----ACCc -5'
12974 3' -54.1 NC_003387.1 + 47156 0.68 0.612573
Target:  5'- aGUGGAUAGCGGGCacCGCggUGGcCCUGGu -3'
miRNA:   3'- gUACCUGUUGUUCG--GCG--ACU-GGACCc -5'
12974 3' -54.1 NC_003387.1 + 12828 0.68 0.623718
Target:  5'- --aGGGCGGCAAGCCGaagggcGGCgUGGa -3'
miRNA:   3'- guaCCUGUUGUUCGGCga----CUGgACCc -5'
12974 3' -54.1 NC_003387.1 + 46306 0.68 0.623718
Target:  5'- --cGGcGCAGCGGGCCGCUGGgaaGGGc -3'
miRNA:   3'- guaCC-UGUUGUUCGGCGACUggaCCC- -5'
12974 3' -54.1 NC_003387.1 + 38925 0.78 0.173143
Target:  5'- cUAUGGcGCAACGuGGCCGCUGAUCUGcGGc -3'
miRNA:   3'- -GUACC-UGUUGU-UCGGCGACUGGAC-CC- -5'
12974 3' -54.1 NC_003387.1 + 24942 0.8 0.123779
Target:  5'- ---cGACGGCGGGCCGCcugaUGGCCUGGGu -3'
miRNA:   3'- guacCUGUUGUUCGGCG----ACUGGACCC- -5'
12974 3' -54.1 NC_003387.1 + 40206 1.11 0.000835
Target:  5'- aCAUGGACAACAAGCCGCUGACCUGGGa -3'
miRNA:   3'- -GUACCUGUUGUUCGGCGACUGGACCC- -5'
12974 3' -54.1 NC_003387.1 + 41788 0.68 0.657159
Target:  5'- --cGGGC-GCGuGCCGC-GACCUGGc -3'
miRNA:   3'- guaCCUGuUGUuCGGCGaCUGGACCc -5'
12974 3' -54.1 NC_003387.1 + 13304 0.67 0.70136
Target:  5'- --aGGGCGGCGgccucgacGGCaGC-GACCUGGGc -3'
miRNA:   3'- guaCCUGUUGU--------UCGgCGaCUGGACCC- -5'
12974 3' -54.1 NC_003387.1 + 23100 0.68 0.668273
Target:  5'- -cUGuACGGCAAGCCGCUGgcGCCcGGc -3'
miRNA:   3'- guACcUGUUGUUCGGCGAC--UGGaCCc -5'
12974 3' -54.1 NC_003387.1 + 45433 0.67 0.690385
Target:  5'- --aGGACAugcGCAAGCuCGCcgGGCCUGc- -3'
miRNA:   3'- guaCCUGU---UGUUCG-GCGa-CUGGACcc -5'
12974 3' -54.1 NC_003387.1 + 47938 0.66 0.743393
Target:  5'- gCAUGGGCAcgACGccgugugGGCCGCgaagcaccgcGAgCUGGGc -3'
miRNA:   3'- -GUACCUGU--UGU-------UCGGCGa---------CUgGACCC- -5'
12974 3' -54.1 NC_003387.1 + 43445 0.66 0.775584
Target:  5'- --aGGcCAAgguCAAGCUGCUGACCgGcGGc -3'
miRNA:   3'- guaCCuGUU---GUUCGGCGACUGGaC-CC- -5'
12974 3' -54.1 NC_003387.1 + 28787 0.68 0.668273
Target:  5'- gCAUGGGCAcugGCAcaCCGC-GGCgUGGGa -3'
miRNA:   3'- -GUACCUGU---UGUucGGCGaCUGgACCC- -5'
12974 3' -54.1 NC_003387.1 + 40933 0.67 0.679352
Target:  5'- gAUGGACGGCGAGCUGgUcGCCaaGGu -3'
miRNA:   3'- gUACCUGUUGUUCGGCgAcUGGacCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.