miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12974 5' -59.7 NC_003387.1 + 40240 1.08 0.000371
Target:  5'- cAGCCCCCGCAUGCAGCUCGUCGUGACc -3'
miRNA:   3'- -UCGGGGGCGUACGUCGAGCAGCACUG- -5'
12974 5' -59.7 NC_003387.1 + 10753 0.79 0.056892
Target:  5'- cGGCCUCCGCGcGCAGCUCcUCGcUGGCg -3'
miRNA:   3'- -UCGGGGGCGUaCGUCGAGcAGC-ACUG- -5'
12974 5' -59.7 NC_003387.1 + 35619 0.79 0.061978
Target:  5'- cGCCCCCGC---CAGCUCGUCGUcGAUa -3'
miRNA:   3'- uCGGGGGCGuacGUCGAGCAGCA-CUG- -5'
12974 5' -59.7 NC_003387.1 + 9000 0.76 0.092085
Target:  5'- gGGCUCCCGCAUGCcGC-CGUCGagcaccUGGCg -3'
miRNA:   3'- -UCGGGGGCGUACGuCGaGCAGC------ACUG- -5'
12974 5' -59.7 NC_003387.1 + 11446 0.73 0.168549
Target:  5'- uGCCCgCGC-UGCAGCUCGcCGccggGGCg -3'
miRNA:   3'- uCGGGgGCGuACGUCGAGCaGCa---CUG- -5'
12974 5' -59.7 NC_003387.1 + 8907 0.71 0.208309
Target:  5'- cGCCCUCGCcgaucGUGCAGCacUCGUCGagGAa -3'
miRNA:   3'- uCGGGGGCG-----UACGUCG--AGCAGCa-CUg -5'
12974 5' -59.7 NC_003387.1 + 48152 0.71 0.213813
Target:  5'- cGGCCUCgGCGaGCAGCUUGUCGg--- -3'
miRNA:   3'- -UCGGGGgCGUaCGUCGAGCAGCacug -5'
12974 5' -59.7 NC_003387.1 + 46883 0.71 0.213813
Target:  5'- cGCCCCCaCcUGCGGCgcagcccgggUCGUCGUGcACg -3'
miRNA:   3'- uCGGGGGcGuACGUCG----------AGCAGCAC-UG- -5'
12974 5' -59.7 NC_003387.1 + 19763 0.71 0.213813
Target:  5'- cGGCUCCuCGCcuugcUGCAGCUCGUCGa--- -3'
miRNA:   3'- -UCGGGG-GCGu----ACGUCGAGCAGCacug -5'
12974 5' -59.7 NC_003387.1 + 20356 0.7 0.255911
Target:  5'- cAGCCCCCGCcucGUGCGGggguugUGUCGUuuaGGCg -3'
miRNA:   3'- -UCGGGGGCG---UACGUCga----GCAGCA---CUG- -5'
12974 5' -59.7 NC_003387.1 + 759 0.69 0.289975
Target:  5'- cGGCCaCCGCG-GCAGCgaCGUCG-GGCa -3'
miRNA:   3'- -UCGGgGGCGUaCGUCGa-GCAGCaCUG- -5'
12974 5' -59.7 NC_003387.1 + 28471 0.69 0.2972
Target:  5'- cGGCCCCCGag-GUcaAGCUCGacgUCGUcGGCg -3'
miRNA:   3'- -UCGGGGGCguaCG--UCGAGC---AGCA-CUG- -5'
12974 5' -59.7 NC_003387.1 + 20507 0.69 0.2972
Target:  5'- cGCUCgCGCAgcgcgGCGucgcGCUCGUCgGUGACg -3'
miRNA:   3'- uCGGGgGCGUa----CGU----CGAGCAG-CACUG- -5'
12974 5' -59.7 NC_003387.1 + 41800 0.69 0.312068
Target:  5'- cGCgCCCUGCGcgaccauguccUGCAGCgCGUCGccgcUGACg -3'
miRNA:   3'- uCG-GGGGCGU-----------ACGUCGaGCAGC----ACUG- -5'
12974 5' -59.7 NC_003387.1 + 48107 0.68 0.327494
Target:  5'- uGCgCCCGCG-GUGGCUCGccgaucaCGUGGCa -3'
miRNA:   3'- uCGgGGGCGUaCGUCGAGCa------GCACUG- -5'
12974 5' -59.7 NC_003387.1 + 35094 0.68 0.335417
Target:  5'- uGGCCUggcaCGCAUucCGGCUCGUCGagGACa -3'
miRNA:   3'- -UCGGGg---GCGUAc-GUCGAGCAGCa-CUG- -5'
12974 5' -59.7 NC_003387.1 + 44479 0.68 0.343478
Target:  5'- uGGCCCCgcacagcagCGCGUGCAGCagaUCGgCGUuGCg -3'
miRNA:   3'- -UCGGGG---------GCGUACGUCG---AGCaGCAcUG- -5'
12974 5' -59.7 NC_003387.1 + 18038 0.68 0.359175
Target:  5'- aGGCCCacggcguguuuuUCGUcgggcucGUGCAGCUCGUUG-GGCg -3'
miRNA:   3'- -UCGGG------------GGCG-------UACGUCGAGCAGCaCUG- -5'
12974 5' -59.7 NC_003387.1 + 39208 0.67 0.369345
Target:  5'- aGGCCCCCGCGgucggGCAGUgggagcggguaccggCGcCG-GGCg -3'
miRNA:   3'- -UCGGGGGCGUa----CGUCGa--------------GCaGCaCUG- -5'
12974 5' -59.7 NC_003387.1 + 46102 0.67 0.380582
Target:  5'- cGGCCgCCGaCAUGUuccggcugcugcgguGGCUCGggCGUGAg -3'
miRNA:   3'- -UCGGgGGC-GUACG---------------UCGAGCa-GCACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.