miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 3' -65.4 NC_003387.1 + 39762 0.66 0.238962
Target:  5'- cGCCCGGUaCGaGCCgc-CAGaCGCCGAc -3'
miRNA:   3'- -CGGGCCGgGC-CGGacuGUC-GCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 34424 0.66 0.238962
Target:  5'- cGCCaccGCCgCGGCCgGGuCGGCGCUGGu -3'
miRNA:   3'- -CGGgc-CGG-GCCGGaCU-GUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 15594 0.66 0.238962
Target:  5'- uGCCCaaccaucacGGCCCGGCC-GACgucgAGCacGUCGAGg -3'
miRNA:   3'- -CGGG---------CCGGGCCGGaCUG----UCG--CGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 50261 0.66 0.238962
Target:  5'- cGCCgGGCggugcaccUCGGCCUGGCGcGCGUCc-- -3'
miRNA:   3'- -CGGgCCG--------GGCCGGACUGU-CGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 35523 0.66 0.233132
Target:  5'- uGCCuCGGCCuCGGCC--ACuuucGCGCCGu- -3'
miRNA:   3'- -CGG-GCCGG-GCCGGacUGu---CGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 4926 0.66 0.247327
Target:  5'- uGCCCGGCgCGGCguCgcgcguugucgaacgUGACAGaccaGCCGGu -3'
miRNA:   3'- -CGGGCCGgGCCG--G---------------ACUGUCg---CGGCUu -5'
12975 3' -65.4 NC_003387.1 + 22494 0.66 0.227422
Target:  5'- aCCgGGCgaCGGCCUcGGCGGCGCgcuCGAc -3'
miRNA:   3'- cGGgCCGg-GCCGGA-CUGUCGCG---GCUu -5'
12975 3' -65.4 NC_003387.1 + 31347 0.66 0.227422
Target:  5'- aGCgCGGgucgaacagcaCCGGCCagGGCAGCGUCGGc -3'
miRNA:   3'- -CGgGCCg----------GGCCGGa-CUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 24846 0.66 0.227422
Target:  5'- gGCCgGGCuCCuGCUcGACcGCGCCGGu -3'
miRNA:   3'- -CGGgCCG-GGcCGGaCUGuCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 23408 0.66 0.227422
Target:  5'- aGCgCGGCCUGGCgCUcgugcccGCGGuCGCCGGGg -3'
miRNA:   3'- -CGgGCCGGGCCG-GAc------UGUC-GCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 47034 0.67 0.185904
Target:  5'- gGCCCGGCCgGGCaugaGGCguGGCGCuCGu- -3'
miRNA:   3'- -CGGGCCGGgCCGga--CUG--UCGCG-GCuu -5'
12975 3' -65.4 NC_003387.1 + 51411 0.67 0.205758
Target:  5'- -aCCGGCgaGcGCCUG-CGGCGCCGc- -3'
miRNA:   3'- cgGGCCGggC-CGGACuGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 10517 0.67 0.211001
Target:  5'- cGCUCGGCUCGGCgaUG-CGG-GCCGGGu -3'
miRNA:   3'- -CGGGCCGGGCCGg-ACuGUCgCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 33752 0.67 0.205758
Target:  5'- cCCCGGCaagGGCaacGGCGGCGCCGc- -3'
miRNA:   3'- cGGGCCGgg-CCGga-CUGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 45202 0.67 0.200629
Target:  5'- uGCCCGGCCCGuuC-GACccGCGgCCGAu -3'
miRNA:   3'- -CGGGCCGGGCcgGaCUGu-CGC-GGCUu -5'
12975 3' -65.4 NC_003387.1 + 3841 0.67 0.211001
Target:  5'- --gCGGCgCGGUa-GGCGGCGCCGAc -3'
miRNA:   3'- cggGCCGgGCCGgaCUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 36728 0.67 0.207842
Target:  5'- uGCCCGGCCuCGacgccgucugcgagcGCCUGGgcgucaccguCAGCGaCCGGc -3'
miRNA:   3'- -CGGGCCGG-GC---------------CGGACU----------GUCGC-GGCUu -5'
12975 3' -65.4 NC_003387.1 + 50690 0.67 0.205758
Target:  5'- aGCUCGGCgacggCGGCCgucGGCGGCaCCGAGc -3'
miRNA:   3'- -CGGGCCGg----GCCGGa--CUGUCGcGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 18401 0.67 0.185904
Target:  5'- uGCgaCGGgUCGGCCgcgGGCAGCGCgGGc -3'
miRNA:   3'- -CGg-GCCgGGCCGGa--CUGUCGCGgCUu -5'
12975 3' -65.4 NC_003387.1 + 45331 0.67 0.196108
Target:  5'- aCCCGGCCgCGGCCgauccgugcagcucaGGCGacGCGCuCGAGu -3'
miRNA:   3'- cGGGCCGG-GCCGGa--------------CUGU--CGCG-GCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.