miRNA display CGI


Results 21 - 40 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 3' -65.4 NC_003387.1 + 23408 0.66 0.227422
Target:  5'- aGCgCGGCCUGGCgCUcgugcccGCGGuCGCCGGGg -3'
miRNA:   3'- -CGgGCCGGGCCG-GAc------UGUC-GCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 22494 0.66 0.227422
Target:  5'- aCCgGGCgaCGGCCUcGGCGGCGCgcuCGAc -3'
miRNA:   3'- cGGgCCGg-GCCGGA-CUGUCGCG---GCUu -5'
12975 3' -65.4 NC_003387.1 + 15419 0.66 0.227422
Target:  5'- -gUCGGCgCGGUCgacGACcGCGCCGAc -3'
miRNA:   3'- cgGGCCGgGCCGGa--CUGuCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 24846 0.66 0.227422
Target:  5'- gGCCgGGCuCCuGCUcGACcGCGCCGGu -3'
miRNA:   3'- -CGGgCCG-GGcCGGaCUGuCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 31347 0.66 0.227422
Target:  5'- aGCgCGGgucgaacagcaCCGGCCagGGCAGCGUCGGc -3'
miRNA:   3'- -CGgGCCg----------GGCCGGa-CUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 35690 0.66 0.221832
Target:  5'- cGCCCGGCgaGGgC-GGCAGcCGCCGc- -3'
miRNA:   3'- -CGGGCCGggCCgGaCUGUC-GCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 37296 0.66 0.221831
Target:  5'- cGCUcguCGGCgCGGUCgucGACcGCGCCGAc -3'
miRNA:   3'- -CGG---GCCGgGCCGGa--CUGuCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 6931 0.66 0.221279
Target:  5'- -gUCGGCCaucaucgCGGCCUGcGCAGCGgCGGg -3'
miRNA:   3'- cgGGCCGG-------GCCGGAC-UGUCGCgGCUu -5'
12975 3' -65.4 NC_003387.1 + 30056 0.66 0.216358
Target:  5'- cGCCCacgaGCgCGcCCUGACGGCcGCCGGGg -3'
miRNA:   3'- -CGGGc---CGgGCcGGACUGUCG-CGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 49701 0.66 0.216358
Target:  5'- aGCCCGGCaugaaCGuGCCgaaGCAaCGCCGGAa -3'
miRNA:   3'- -CGGGCCGg----GC-CGGac-UGUcGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 10517 0.67 0.211001
Target:  5'- cGCUCGGCUCGGCgaUG-CGG-GCCGGGu -3'
miRNA:   3'- -CGGGCCGGGCCGg-ACuGUCgCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 3841 0.67 0.211001
Target:  5'- --gCGGCgCGGUa-GGCGGCGCCGAc -3'
miRNA:   3'- cggGCCGgGCCGgaCUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 44593 0.67 0.211001
Target:  5'- uGCCCGGCCgGGaca-GCAGCGCguaCGAGc -3'
miRNA:   3'- -CGGGCCGGgCCggacUGUCGCG---GCUU- -5'
12975 3' -65.4 NC_003387.1 + 42019 0.67 0.210472
Target:  5'- uGCUC-GCCCGGCUUGAuacCGGCggccaccGCCGAGg -3'
miRNA:   3'- -CGGGcCGGGCCGGACU---GUCG-------CGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 36728 0.67 0.207842
Target:  5'- uGCCCGGCCuCGacgccgucugcgagcGCCUGGgcgucaccguCAGCGaCCGGc -3'
miRNA:   3'- -CGGGCCGG-GC---------------CGGACU----------GUCGC-GGCUu -5'
12975 3' -65.4 NC_003387.1 + 50690 0.67 0.205758
Target:  5'- aGCUCGGCgacggCGGCCgucGGCGGCaCCGAGc -3'
miRNA:   3'- -CGGGCCGg----GCCGGa--CUGUCGcGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 51411 0.67 0.205758
Target:  5'- -aCCGGCgaGcGCCUG-CGGCGCCGc- -3'
miRNA:   3'- cgGGCCGggC-CGGACuGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 33752 0.67 0.205758
Target:  5'- cCCCGGCaagGGCaacGGCGGCGCCGc- -3'
miRNA:   3'- cGGGCCGgg-CCGga-CUGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 45202 0.67 0.200629
Target:  5'- uGCCCGGCCCGuuC-GACccGCGgCCGAu -3'
miRNA:   3'- -CGGGCCGGGCcgGaCUGu-CGC-GGCUu -5'
12975 3' -65.4 NC_003387.1 + 45331 0.67 0.196108
Target:  5'- aCCCGGCCgCGGCCgauccgugcagcucaGGCGacGCGCuCGAGu -3'
miRNA:   3'- cGGGCCGG-GCCGGa--------------CUGU--CGCG-GCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.