miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 5' -54.9 NC_003387.1 + 9531 0.66 0.716115
Target:  5'- cCGUCAagcGGUGCcugcgCAAGCCGc-CGCCGg -3'
miRNA:   3'- -GCGGU---UCAUGua---GUUCGGCucGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 49570 0.66 0.716115
Target:  5'- uCGCCgAGGUGCGcCcgcuGCCGGGCGgUGg -3'
miRNA:   3'- -GCGG-UUCAUGUaGuu--CGGCUCGCgGC- -5'
12975 5' -54.9 NC_003387.1 + 38434 0.66 0.716115
Target:  5'- gCGCCGcuuuuuauAGUcgacGCGcUCGGGCUuGGCGCCGa -3'
miRNA:   3'- -GCGGU--------UCA----UGU-AGUUCGGcUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 44819 0.66 0.716115
Target:  5'- gGCCAcacGUGCGcgCGGGCaCGAGUgcgGCCGa -3'
miRNA:   3'- gCGGUu--CAUGUa-GUUCG-GCUCG---CGGC- -5'
12975 5' -54.9 NC_003387.1 + 708 0.66 0.712879
Target:  5'- uCGCCucGU-CGUCGagGGCCGAcaggucgggcagguGCGCCa -3'
miRNA:   3'- -GCGGuuCAuGUAGU--UCGGCU--------------CGCGGc -5'
12975 5' -54.9 NC_003387.1 + 15559 0.66 0.705299
Target:  5'- cCGCCGgaGGUGC----AGCCGAuucGCGCCu -3'
miRNA:   3'- -GCGGU--UCAUGuaguUCGGCU---CGCGGc -5'
12975 5' -54.9 NC_003387.1 + 21298 0.66 0.705299
Target:  5'- uCGUCGAGgcCGUCGAGCaguGGCGCg- -3'
miRNA:   3'- -GCGGUUCauGUAGUUCGgc-UCGCGgc -5'
12975 5' -54.9 NC_003387.1 + 9505 0.66 0.705299
Target:  5'- aCGU--GGUGCGUCAccucGCCGAuCGCCGc -3'
miRNA:   3'- -GCGguUCAUGUAGUu---CGGCUcGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 35547 0.66 0.702039
Target:  5'- cCGCCAGGaGCA-CGAcGCCGcgauggacuaccucGGCGCCc -3'
miRNA:   3'- -GCGGUUCaUGUaGUU-CGGC--------------UCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 45103 0.66 0.69441
Target:  5'- gGCCAGGU-CGUCGAcGCCGcGGUGUaCGa -3'
miRNA:   3'- gCGGUUCAuGUAGUU-CGGC-UCGCG-GC- -5'
12975 5' -54.9 NC_003387.1 + 30477 0.66 0.69441
Target:  5'- -aCCAAGUGCuUCccGUCG-GCGCCGg -3'
miRNA:   3'- gcGGUUCAUGuAGuuCGGCuCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 42430 0.66 0.693318
Target:  5'- cCGCaAGGU-CGUCAccgagcgguucaaGGCCGAguGCGCCGc -3'
miRNA:   3'- -GCGgUUCAuGUAGU-------------UCGGCU--CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 4626 0.67 0.676866
Target:  5'- gGCCAAGgcgGCca-AGGCCGAuaaggacaaggcccgGCGCCa -3'
miRNA:   3'- gCGGUUCa--UGuagUUCGGCU---------------CGCGGc -5'
12975 5' -54.9 NC_003387.1 + 33741 0.67 0.672461
Target:  5'- cCGCCAGcu-CGUCGAugcucGCCGGGgUGCCGa -3'
miRNA:   3'- -GCGGUUcauGUAGUU-----CGGCUC-GCGGC- -5'
12975 5' -54.9 NC_003387.1 + 9011 0.67 0.672461
Target:  5'- uGCCGc---CGUCGAGCaccuggCGGGCGCCGu -3'
miRNA:   3'- gCGGUucauGUAGUUCG------GCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 3647 0.67 0.672461
Target:  5'- aCGCCugcGcGCcgCGAGCCugcccgguGAGCGCCa -3'
miRNA:   3'- -GCGGuu-CaUGuaGUUCGG--------CUCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 4383 0.67 0.672461
Target:  5'- gGCCAGGUGCuccugauacUCGcGCuCGcGCGCCGc -3'
miRNA:   3'- gCGGUUCAUGu--------AGUuCG-GCuCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 31123 0.67 0.670256
Target:  5'- gCGCCAGGUgggcgccgcccgagaACAUCGAGUCGuGCaggaucagcucgguuGCCu -3'
miRNA:   3'- -GCGGUUCA---------------UGUAGUUCGGCuCG---------------CGGc -5'
12975 5' -54.9 NC_003387.1 + 7793 0.67 0.669153
Target:  5'- uGCCcgAGGUGCA---GGCCGAGCugcaacgccuggcgGCCGa -3'
miRNA:   3'- gCGG--UUCAUGUaguUCGGCUCG--------------CGGC- -5'
12975 5' -54.9 NC_003387.1 + 48565 0.67 0.661422
Target:  5'- uGCCAGgcGUGCAUCGAcGCCcgccuCGCCGa -3'
miRNA:   3'- gCGGUU--CAUGUAGUU-CGGcuc--GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.