miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12976 3' -57 NC_003387.1 + 39651 0.66 0.613115
Target:  5'- -cGCCUugUCGAGCGCGUacugcuuguCCUCGAUAg -3'
miRNA:   3'- guUGGAcuGGUUCGCGCG---------GGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 43785 0.66 0.613115
Target:  5'- -cACCagGACC-GGCGuCGCCCgcuuccUCGACGa -3'
miRNA:   3'- guUGGa-CUGGuUCGC-GCGGG------AGCUGU- -5'
12976 3' -57 NC_003387.1 + 15125 0.66 0.613115
Target:  5'- -cGCCUGACCcuGUGCGCgaCC-CGAUu -3'
miRNA:   3'- guUGGACUGGuuCGCGCG--GGaGCUGu -5'
12976 3' -57 NC_003387.1 + 14984 0.66 0.613115
Target:  5'- gCAGCUUG-CCGucgaauguuGC-CGCCCUCGGCu -3'
miRNA:   3'- -GUUGGACuGGUu--------CGcGCGGGAGCUGu -5'
12976 3' -57 NC_003387.1 + 29159 0.66 0.613115
Target:  5'- gUAGCC-GACCGAGCG-GCCgUCGuuCGa -3'
miRNA:   3'- -GUUGGaCUGGUUCGCgCGGgAGCu-GU- -5'
12976 3' -57 NC_003387.1 + 42956 0.66 0.613115
Target:  5'- gAACCaUGuCCcGGCggaucGCGUCCUCGACu -3'
miRNA:   3'- gUUGG-ACuGGuUCG-----CGCGGGAGCUGu -5'
12976 3' -57 NC_003387.1 + 6081 0.66 0.613115
Target:  5'- aCGACC--GCCGGG-GCGUCgUCGGCAg -3'
miRNA:   3'- -GUUGGacUGGUUCgCGCGGgAGCUGU- -5'
12976 3' -57 NC_003387.1 + 42894 0.66 0.608733
Target:  5'- aGGCCgggGGCCAgcacaaaAGCGCaGCCugcagcgccggucgCUCGACAa -3'
miRNA:   3'- gUUGGa--CUGGU-------UCGCG-CGG--------------GAGCUGU- -5'
12976 3' -57 NC_003387.1 + 26800 0.66 0.606544
Target:  5'- uCGACgaGGCCGcgcugguggucggugAGCGCgccGCCCUgGACGc -3'
miRNA:   3'- -GUUGgaCUGGU---------------UCGCG---CGGGAgCUGU- -5'
12976 3' -57 NC_003387.1 + 10248 0.66 0.602167
Target:  5'- gAGCCgcGCCGAGCGCgggcucaaggucGCCCcgaaguUCGACAc -3'
miRNA:   3'- gUUGGacUGGUUCGCG------------CGGG------AGCUGU- -5'
12976 3' -57 NC_003387.1 + 35537 0.66 0.602167
Target:  5'- aCAACCUGGCCcgccagGAGCacgacgccGCGauggacuaCCUCGGCGc -3'
miRNA:   3'- -GUUGGACUGG------UUCG--------CGCg-------GGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 47689 0.66 0.591244
Target:  5'- -cACC-GACuCGcgcAGCGcCGCCCUCGugAg -3'
miRNA:   3'- guUGGaCUG-GU---UCGC-GCGGGAGCugU- -5'
12976 3' -57 NC_003387.1 + 35662 0.66 0.591244
Target:  5'- uCGACCcacUCGAuCGCGUCCUCGACGa -3'
miRNA:   3'- -GUUGGacuGGUUcGCGCGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 40536 0.66 0.591244
Target:  5'- gCGACCUGcCCGagGGCGUGaCCCcCGAg- -3'
miRNA:   3'- -GUUGGACuGGU--UCGCGC-GGGaGCUgu -5'
12976 3' -57 NC_003387.1 + 29691 0.66 0.587973
Target:  5'- uCGACgUGGCCGaggucgaggcgcucGGCgGCGCCCaggcCGACGa -3'
miRNA:   3'- -GUUGgACUGGU--------------UCG-CGCGGGa---GCUGU- -5'
12976 3' -57 NC_003387.1 + 26116 0.66 0.580356
Target:  5'- -uACCUGcGCCAggucGGCGCGUCCgUCGcCGc -3'
miRNA:   3'- guUGGAC-UGGU----UCGCGCGGG-AGCuGU- -5'
12976 3' -57 NC_003387.1 + 40263 0.66 0.580356
Target:  5'- aGGCCcgcGGCCAGGC-CGCcgccagcgaaCCUCGGCAg -3'
miRNA:   3'- gUUGGa--CUGGUUCGcGCG----------GGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 29507 0.66 0.580356
Target:  5'- aCAGCCgcaGACaaugcuGCGaaaauGCCCUCGACGc -3'
miRNA:   3'- -GUUGGa--CUGguu---CGCg----CGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 3139 0.66 0.56951
Target:  5'- -uGCCaGGCCAccgcccggcAGCggGCGCaCCUCGGCGa -3'
miRNA:   3'- guUGGaCUGGU---------UCG--CGCG-GGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 6372 0.66 0.56951
Target:  5'- uGGCCUcGGCCGcgGGCGaCGCCUUgCGugGg -3'
miRNA:   3'- gUUGGA-CUGGU--UCGC-GCGGGA-GCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.