miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12976 3' -57 NC_003387.1 + 40730 1.08 0.000696
Target:  5'- gCAACCUGACCAAGCGCGCCCUCGACAa -3'
miRNA:   3'- -GUUGGACUGGUUCGCGCGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 37092 0.87 0.024651
Target:  5'- uCGACCUcGCCGuGCGCGCCCUCGACGu -3'
miRNA:   3'- -GUUGGAcUGGUuCGCGCGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 6783 0.83 0.048357
Target:  5'- uCAACCUGGCCGAGCGCgacauggucGCCCUgCGGCu -3'
miRNA:   3'- -GUUGGACUGGUUCGCG---------CGGGA-GCUGu -5'
12976 3' -57 NC_003387.1 + 33554 0.83 0.048357
Target:  5'- gCGACC-GugCGGGcCGCGCCCUCGACAg -3'
miRNA:   3'- -GUUGGaCugGUUC-GCGCGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 41264 0.79 0.091111
Target:  5'- uGACgCUGACCGuGCGCcCCCUCGACGg -3'
miRNA:   3'- gUUG-GACUGGUuCGCGcGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 29365 0.76 0.154958
Target:  5'- gCGACCUGACCGucAGCgGCGCCggUGACGa -3'
miRNA:   3'- -GUUGGACUGGU--UCG-CGCGGgaGCUGU- -5'
12976 3' -57 NC_003387.1 + 5434 0.75 0.163658
Target:  5'- aCAACUcGACCGAGgGCGCCgaCGGCGg -3'
miRNA:   3'- -GUUGGaCUGGUUCgCGCGGgaGCUGU- -5'
12976 3' -57 NC_003387.1 + 7633 0.75 0.16545
Target:  5'- aCGACCUGGCCGccgaacaccggcccaGGaCG-GCCCUCGACGc -3'
miRNA:   3'- -GUUGGACUGGU---------------UC-GCgCGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 2596 0.75 0.187354
Target:  5'- -cGCCUGGCCGcAGUaCGCCCUCGAa- -3'
miRNA:   3'- guUGGACUGGU-UCGcGCGGGAGCUgu -5'
12976 3' -57 NC_003387.1 + 27971 0.74 0.191928
Target:  5'- uCGGCUUGGCCGGugccguuGCgGCGCCCUCGAUu -3'
miRNA:   3'- -GUUGGACUGGUU-------CG-CGCGGGAGCUGu -5'
12976 3' -57 NC_003387.1 + 44791 0.74 0.197651
Target:  5'- aCAAgCUGGCCc-GCGCGaUCCUCGACGg -3'
miRNA:   3'- -GUUgGACUGGuuCGCGC-GGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 6961 0.74 0.208439
Target:  5'- gGGCaggcGCCAcAGCGCGCCCUCGGCc -3'
miRNA:   3'- gUUGgac-UGGU-UCGCGCGGGAGCUGu -5'
12976 3' -57 NC_003387.1 + 42675 0.74 0.208439
Target:  5'- -uACC-GGCCGAcacCGCGCCCUCGGCGc -3'
miRNA:   3'- guUGGaCUGGUUc--GCGCGGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 2608 0.74 0.219731
Target:  5'- gCGAUCgUGACCAGGCGCucgcgGgCCUCGGCGa -3'
miRNA:   3'- -GUUGG-ACUGGUUCGCG-----CgGGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 48355 0.73 0.23154
Target:  5'- -cACCUGGCCGccgAGCGCGCCaagGGCAa -3'
miRNA:   3'- guUGGACUGGU---UCGCGCGGgagCUGU- -5'
12976 3' -57 NC_003387.1 + 24096 0.73 0.237643
Target:  5'- cCGACCaUGACuCAGGgaUGCGCaCCUCGACGu -3'
miRNA:   3'- -GUUGG-ACUG-GUUC--GCGCG-GGAGCUGU- -5'
12976 3' -57 NC_003387.1 + 37974 0.73 0.237643
Target:  5'- gCAGCUUGACCAucCG-GCCCUCGAUg -3'
miRNA:   3'- -GUUGGACUGGUucGCgCGGGAGCUGu -5'
12976 3' -57 NC_003387.1 + 47580 0.73 0.24388
Target:  5'- cCGACCggcGCCGAGCGC-CCCUCGuCGc -3'
miRNA:   3'- -GUUGGac-UGGUUCGCGcGGGAGCuGU- -5'
12976 3' -57 NC_003387.1 + 19349 0.73 0.24388
Target:  5'- gAACCUGGCCGGGCGgGCUCUgGuuGc -3'
miRNA:   3'- gUUGGACUGGUUCGCgCGGGAgCugU- -5'
12976 3' -57 NC_003387.1 + 31012 0.72 0.263409
Target:  5'- gGAUCgGGCCGAGCGUGCgCCggggCGGCGg -3'
miRNA:   3'- gUUGGaCUGGUUCGCGCG-GGa---GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.