miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12976 5' -57 NC_003387.1 + 22681 0.66 0.613641
Target:  5'- --gGCCGAGcggguuucguagcacGUGCGCCUCGcCCGu-- -3'
miRNA:   3'- augUGGCUC---------------CACGCGGAGCuGGUucu -5'
12976 5' -57 NC_003387.1 + 36013 0.66 0.609253
Target:  5'- gGCGaggUCGuGGUGCGCCgcaagCGgAUCAAGAg -3'
miRNA:   3'- aUGU---GGCuCCACGCGGa----GC-UGGUUCU- -5'
12976 5' -57 NC_003387.1 + 39603 0.66 0.598297
Target:  5'- cUGCGCCGcGGUGUGCUUCuuACCcuuGAGGa -3'
miRNA:   3'- -AUGUGGCuCCACGCGGAGc-UGG---UUCU- -5'
12976 5' -57 NC_003387.1 + 2462 0.66 0.598297
Target:  5'- -uCACCucGGUGCGCacgUCGGCCAc-- -3'
miRNA:   3'- auGUGGcuCCACGCGg--AGCUGGUucu -5'
12976 5' -57 NC_003387.1 + 42039 0.66 0.598297
Target:  5'- aGCGCC-AGG-GCGCCaagaUCGACCGcGGc -3'
miRNA:   3'- aUGUGGcUCCaCGCGG----AGCUGGUuCU- -5'
12976 5' -57 NC_003387.1 + 28529 0.66 0.598297
Target:  5'- gUGCGCCGucauAGGUGCcgcuguuuuggGCCUCGauGCCGAu- -3'
miRNA:   3'- -AUGUGGC----UCCACG-----------CGGAGC--UGGUUcu -5'
12976 5' -57 NC_003387.1 + 3962 0.66 0.598297
Target:  5'- cUGCGCCGAGcaccgcGUGCGUgaCGuucCCAGGAu -3'
miRNA:   3'- -AUGUGGCUC------CACGCGgaGCu--GGUUCU- -5'
12976 5' -57 NC_003387.1 + 32188 0.66 0.58737
Target:  5'- -cCGCCGAGcUGCGCgUCGucACCGAcGAg -3'
miRNA:   3'- auGUGGCUCcACGCGgAGC--UGGUU-CU- -5'
12976 5' -57 NC_003387.1 + 4442 0.66 0.58737
Target:  5'- -uCGCCGAGcccGCGCCgaaGGCCGAGc -3'
miRNA:   3'- auGUGGCUCca-CGCGGag-CUGGUUCu -5'
12976 5' -57 NC_003387.1 + 46938 0.66 0.586279
Target:  5'- gGCACCGAGGUGUcgauccgcggcgaGCg-CGGCCGGu- -3'
miRNA:   3'- aUGUGGCUCCACG-------------CGgaGCUGGUUcu -5'
12976 5' -57 NC_003387.1 + 23906 0.66 0.586279
Target:  5'- cGCGCCGAGGgGCugaacgucgucgaGCugcccggcuggCUCGACCGGGGc -3'
miRNA:   3'- aUGUGGCUCCaCG-------------CG-----------GAGCUGGUUCU- -5'
12976 5' -57 NC_003387.1 + 41759 0.66 0.57648
Target:  5'- cGCGgUGuGGUGCGaCCUCGACguCAAGc -3'
miRNA:   3'- aUGUgGCuCCACGC-GGAGCUG--GUUCu -5'
12976 5' -57 NC_003387.1 + 43345 0.66 0.57648
Target:  5'- -cCGCCucgGGGGU-CGCCUCGGCCGc-- -3'
miRNA:   3'- auGUGG---CUCCAcGCGGAGCUGGUucu -5'
12976 5' -57 NC_003387.1 + 49910 0.66 0.565636
Target:  5'- gUGCGCUGAGcUGCGCgUCG-CCGAa- -3'
miRNA:   3'- -AUGUGGCUCcACGCGgAGCuGGUUcu -5'
12976 5' -57 NC_003387.1 + 37785 0.67 0.554846
Target:  5'- -cCACCGGGGaUGCGCCgcugCG-CCGGu- -3'
miRNA:   3'- auGUGGCUCC-ACGCGGa---GCuGGUUcu -5'
12976 5' -57 NC_003387.1 + 25871 0.67 0.554846
Target:  5'- -uCGCCGAGGUGCauccacagcucGCCgagcaGGCCcAAGAu -3'
miRNA:   3'- auGUGGCUCCACG-----------CGGag---CUGG-UUCU- -5'
12976 5' -57 NC_003387.1 + 27147 0.67 0.554846
Target:  5'- -cCGCCGGGGUcgGCGCC---GCCGGGGa -3'
miRNA:   3'- auGUGGCUCCA--CGCGGagcUGGUUCU- -5'
12976 5' -57 NC_003387.1 + 16639 0.67 0.554846
Target:  5'- aUGCACuCGGcGUGCGCCUCgggGugCAGGc -3'
miRNA:   3'- -AUGUG-GCUcCACGCGGAG---CugGUUCu -5'
12976 5' -57 NC_003387.1 + 27982 0.67 0.554846
Target:  5'- aGCACUGgcAGGUGCcuuaccGCC-CGAUCGAGGg -3'
miRNA:   3'- aUGUGGC--UCCACG------CGGaGCUGGUUCU- -5'
12976 5' -57 NC_003387.1 + 30983 0.67 0.533456
Target:  5'- gACGCCGA---GCGCCUCGGCgAcGAu -3'
miRNA:   3'- aUGUGGCUccaCGCGGAGCUGgUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.