miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12976 5' -57 NC_003387.1 + 40770 1.07 0.00084
Target:  5'- gUACACCGAGGUGCGCCUCGACCAAGAu -3'
miRNA:   3'- -AUGUGGCUCCACGCGGAGCUGGUUCU- -5'
12976 5' -57 NC_003387.1 + 42455 0.71 0.326449
Target:  5'- aAgGCCGA-GUGCGCCgCGACCAAc- -3'
miRNA:   3'- aUgUGGCUcCACGCGGaGCUGGUUcu -5'
12976 5' -57 NC_003387.1 + 24777 0.69 0.403738
Target:  5'- cACGCCGA---GCGCCcCGACCGAGc -3'
miRNA:   3'- aUGUGGCUccaCGCGGaGCUGGUUCu -5'
12976 5' -57 NC_003387.1 + 22681 0.66 0.613641
Target:  5'- --gGCCGAGcggguuucguagcacGUGCGCCUCGcCCGu-- -3'
miRNA:   3'- augUGGCUC---------------CACGCGGAGCuGGUucu -5'
12976 5' -57 NC_003387.1 + 49570 0.77 0.122673
Target:  5'- -uCGCCGAGGUGCGCC-CGcuGCCGGGc -3'
miRNA:   3'- auGUGGCUCCACGCGGaGC--UGGUUCu -5'
12976 5' -57 NC_003387.1 + 41374 0.77 0.137123
Target:  5'- gACGCCGAGcGUgaggccgaGCGCCgggCGACCGAGGc -3'
miRNA:   3'- aUGUGGCUC-CA--------CGCGGa--GCUGGUUCU- -5'
12976 5' -57 NC_003387.1 + 49255 0.74 0.195439
Target:  5'- gACGCCGGGGUGaCGCgcaUCGACCGcguGAa -3'
miRNA:   3'- aUGUGGCUCCAC-GCGg--AGCUGGUu--CU- -5'
12976 5' -57 NC_003387.1 + 51202 0.74 0.195439
Target:  5'- gGCACCGAGGUGCugaGCCugcacgUCGGCCGcGGc -3'
miRNA:   3'- aUGUGGCUCCACG---CGG------AGCUGGUuCU- -5'
12976 5' -57 NC_003387.1 + 39156 0.73 0.246352
Target:  5'- cGCGCCGAgggcguguacuggucGGUGCGCgacauucgcgugcagCUCGACCAGGc -3'
miRNA:   3'- aUGUGGCU---------------CCACGCG---------------GAGCUGGUUCu -5'
12976 5' -57 NC_003387.1 + 10044 0.71 0.303245
Target:  5'- cGCGCCGAGG-GCGCggugUCGGCCGGu- -3'
miRNA:   3'- aUGUGGCUCCaCGCGg---AGCUGGUUcu -5'
12976 5' -57 NC_003387.1 + 31016 0.72 0.260691
Target:  5'- cGgGCCGAGcGUGCGCCggggcggCGGCCAGc- -3'
miRNA:   3'- aUgUGGCUC-CACGCGGa------GCUGGUUcu -5'
12976 5' -57 NC_003387.1 + 39621 0.73 0.241303
Target:  5'- -uCGCCGAGGUGgcggcaugaGCCUCGACCcGGu -3'
miRNA:   3'- auGUGGCUCCACg--------CGGAGCUGGuUCu -5'
12976 5' -57 NC_003387.1 + 18194 0.83 0.050527
Target:  5'- gGCugCGAGGUGCGCCUCGGCg---- -3'
miRNA:   3'- aUGugGCUCCACGCGGAGCUGguucu -5'
12976 5' -57 NC_003387.1 + 5441 0.72 0.26743
Target:  5'- --gACCGAGG-GCGCCgacggCGGCCAAa- -3'
miRNA:   3'- augUGGCUCCaCGCGGa----GCUGGUUcu -5'
12976 5' -57 NC_003387.1 + 6008 0.82 0.06014
Target:  5'- cGCGCCGAGGU-CGCCUCGcucauCCAAGAg -3'
miRNA:   3'- aUGUGGCUCCAcGCGGAGCu----GGUUCU- -5'
12976 5' -57 NC_003387.1 + 30147 0.74 0.206137
Target:  5'- cGCACCGAGGccacCCUCGACCAGGc -3'
miRNA:   3'- aUGUGGCUCCacgcGGAGCUGGUUCu -5'
12976 5' -57 NC_003387.1 + 27912 0.72 0.288492
Target:  5'- gUACGCCGAGcugcUGCGCCaggUCGGCCGcGAc -3'
miRNA:   3'- -AUGUGGCUCc---ACGCGG---AGCUGGUuCU- -5'
12976 5' -57 NC_003387.1 + 3313 0.7 0.359396
Target:  5'- gGCGCCGAGGUGCuGUggCGugacACCGAGGc -3'
miRNA:   3'- aUGUGGCUCCACG-CGgaGC----UGGUUCU- -5'
12976 5' -57 NC_003387.1 + 47221 0.8 0.080214
Target:  5'- gGCAUUGuGGUGgGCCUCGGCCAGGu -3'
miRNA:   3'- aUGUGGCuCCACgCGGAGCUGGUUCu -5'
12976 5' -57 NC_003387.1 + 18689 0.75 0.175493
Target:  5'- gUACACCGGGGUgggGCGCCgu-GCCGAGGc -3'
miRNA:   3'- -AUGUGGCUCCA---CGCGGagcUGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.