miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12977 3' -54.2 NC_003387.1 + 45942 0.66 0.781845
Target:  5'- aGCGUGUUCGCCGACggcccgcGCAAgggcgaggcgugcgcUGUGGg-- -3'
miRNA:   3'- -UGCGCGAGUGGCUG-------UGUU---------------ACACCagc -5'
12977 3' -54.2 NC_003387.1 + 36054 0.66 0.778834
Target:  5'- aAUGCaGCuugaUCGCCGACACc---UGGUCGa -3'
miRNA:   3'- -UGCG-CG----AGUGGCUGUGuuacACCAGC- -5'
12977 3' -54.2 NC_003387.1 + 7671 0.66 0.778834
Target:  5'- gACGCGCUCGgCGACcuGCuccucGGUCa -3'
miRNA:   3'- -UGCGCGAGUgGCUG--UGuuacaCCAGc -5'
12977 3' -54.2 NC_003387.1 + 13640 0.66 0.768699
Target:  5'- aGCGCGaaCGgcCCGAcCGCGAcGUGGUCa -3'
miRNA:   3'- -UGCGCgaGU--GGCU-GUGUUaCACCAGc -5'
12977 3' -54.2 NC_003387.1 + 10042 0.66 0.768699
Target:  5'- aGCGCGC-CGagGGCGCGGUGUcGGcCGg -3'
miRNA:   3'- -UGCGCGaGUggCUGUGUUACA-CCaGC- -5'
12977 3' -54.2 NC_003387.1 + 43279 0.66 0.758421
Target:  5'- aGCGUGCUCAUgGACgugcucagcGCGGUGcUGGgCGa -3'
miRNA:   3'- -UGCGCGAGUGgCUG---------UGUUAC-ACCaGC- -5'
12977 3' -54.2 NC_003387.1 + 34422 0.66 0.748012
Target:  5'- -gGCGC-CACCGcCGCGGccgGGUCGg -3'
miRNA:   3'- ugCGCGaGUGGCuGUGUUacaCCAGC- -5'
12977 3' -54.2 NC_003387.1 + 12701 0.67 0.726848
Target:  5'- gACGCGCUCGgCGucgaguACACGAUcUGG-CGg -3'
miRNA:   3'- -UGCGCGAGUgGC------UGUGUUAcACCaGC- -5'
12977 3' -54.2 NC_003387.1 + 29670 0.67 0.694411
Target:  5'- aACGC-CUCGCCGACGuCGAcGUcgacguggccgaGGUCGa -3'
miRNA:   3'- -UGCGcGAGUGGCUGU-GUUaCA------------CCAGC- -5'
12977 3' -54.2 NC_003387.1 + 26785 0.67 0.693318
Target:  5'- -aGCGCcagCACCGccucgacgaggccGCGCug-GUGGUCGg -3'
miRNA:   3'- ugCGCGa--GUGGC-------------UGUGuuaCACCAGC- -5'
12977 3' -54.2 NC_003387.1 + 39754 0.67 0.683461
Target:  5'- gACGaccaGCUCGCCGACGCGGUGc----- -3'
miRNA:   3'- -UGCg---CGAGUGGCUGUGUUACaccagc -5'
12977 3' -54.2 NC_003387.1 + 48150 0.68 0.661423
Target:  5'- aGCGCGC-CACCGAgGCccgcgcGGUCGc -3'
miRNA:   3'- -UGCGCGaGUGGCUgUGuuaca-CCAGC- -5'
12977 3' -54.2 NC_003387.1 + 21093 0.68 0.661423
Target:  5'- gACGCGCUUAgCCaGgGCGGUGcGGUCa -3'
miRNA:   3'- -UGCGCGAGU-GGcUgUGUUACaCCAGc -5'
12977 3' -54.2 NC_003387.1 + 3571 0.68 0.639274
Target:  5'- uGCGCGCUggugugCACCGACAC-GUGUacaGGcgCGa -3'
miRNA:   3'- -UGCGCGA------GUGGCUGUGuUACA---CCa-GC- -5'
12977 3' -54.2 NC_003387.1 + 27285 0.69 0.617098
Target:  5'- aGCGCGCcCugCGaguauccgauaaGCACGAUGUaGUCGa -3'
miRNA:   3'- -UGCGCGaGugGC------------UGUGUUACAcCAGC- -5'
12977 3' -54.2 NC_003387.1 + 21677 0.69 0.583958
Target:  5'- cACGUGUUCGCCGACGCcc--UGGcCGc -3'
miRNA:   3'- -UGCGCGAGUGGCUGUGuuacACCaGC- -5'
12977 3' -54.2 NC_003387.1 + 27197 0.7 0.551182
Target:  5'- gGCGCGagcgcaACCGGCGCAAgucUGcGGUCGa -3'
miRNA:   3'- -UGCGCgag---UGGCUGUGUU---ACaCCAGC- -5'
12977 3' -54.2 NC_003387.1 + 23124 0.7 0.540377
Target:  5'- gGCGCGaccCUCACCGGCaACGGUGUcaUCGa -3'
miRNA:   3'- -UGCGC---GAGUGGCUG-UGUUACAccAGC- -5'
12977 3' -54.2 NC_003387.1 + 2024 0.7 0.520051
Target:  5'- uGCGCGCccaggcgcaucagggUACCGACAcCGAUcUGGUCGa -3'
miRNA:   3'- -UGCGCGa--------------GUGGCUGU-GUUAcACCAGC- -5'
12977 3' -54.2 NC_003387.1 + 2842 0.71 0.44713
Target:  5'- -gGCuGCUCGCCGGCAUuuUGcuacgGGUCGa -3'
miRNA:   3'- ugCG-CGAGUGGCUGUGuuACa----CCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.