miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12977 5' -53.3 NC_003387.1 + 18474 0.66 0.843446
Target:  5'- cGGCGAUCagccGGUCGAGcGCCcCGAggGCc -3'
miRNA:   3'- -CCGCUGGa---UUAGUUC-CGGcGCUagCG- -5'
12977 5' -53.3 NC_003387.1 + 7199 0.66 0.843446
Target:  5'- uGGUGGC---GUCAAugguGGCCGCGGU-GCu -3'
miRNA:   3'- -CCGCUGgauUAGUU----CCGGCGCUAgCG- -5'
12977 5' -53.3 NC_003387.1 + 20895 0.66 0.843446
Target:  5'- cGGCGGCgUcauUgGAGGauGCGAUCGg -3'
miRNA:   3'- -CCGCUGgAuu-AgUUCCggCGCUAGCg -5'
12977 5' -53.3 NC_003387.1 + 25934 0.66 0.843446
Target:  5'- cGCGGCCUcGUCGAGcggugcuggcGCUGC--UCGCu -3'
miRNA:   3'- cCGCUGGAuUAGUUC----------CGGCGcuAGCG- -5'
12977 5' -53.3 NC_003387.1 + 37284 0.66 0.843446
Target:  5'- aGGCG-CCUGGcgcgcUCGucGgCGCGGUCGUc -3'
miRNA:   3'- -CCGCuGGAUU-----AGUucCgGCGCUAGCG- -5'
12977 5' -53.3 NC_003387.1 + 36000 0.66 0.843446
Target:  5'- gGGCacGAUCgacggCGAGGUCGUGGUgCGCc -3'
miRNA:   3'- -CCG--CUGGauua-GUUCCGGCGCUA-GCG- -5'
12977 5' -53.3 NC_003387.1 + 10610 0.66 0.843446
Target:  5'- cGGUcGCCUcGGUCAugcAGGaCGCGAcCGCg -3'
miRNA:   3'- -CCGcUGGA-UUAGU---UCCgGCGCUaGCG- -5'
12977 5' -53.3 NC_003387.1 + 16109 0.66 0.843446
Target:  5'- cGGCGGCCag--CA--GCCGCGAgUCGa -3'
miRNA:   3'- -CCGCUGGauuaGUucCGGCGCU-AGCg -5'
12977 5' -53.3 NC_003387.1 + 6943 0.66 0.843446
Target:  5'- cGCGGCCUGcgCAgcggcGGGCagGCGccacagCGCg -3'
miRNA:   3'- cCGCUGGAUuaGU-----UCCGg-CGCua----GCG- -5'
12977 5' -53.3 NC_003387.1 + 2975 0.66 0.843446
Target:  5'- --gGGCCUcgcUCGGGGCCucGCGAggCGCu -3'
miRNA:   3'- ccgCUGGAuu-AGUUCCGG--CGCUa-GCG- -5'
12977 5' -53.3 NC_003387.1 + 17356 0.66 0.842569
Target:  5'- aGGCGACggcGAUCAGGuGCgGCGAgccugucUCGg -3'
miRNA:   3'- -CCGCUGga-UUAGUUC-CGgCGCU-------AGCg -5'
12977 5' -53.3 NC_003387.1 + 3822 0.66 0.834576
Target:  5'- cGCGACaacgaucGUCAGGGCggCGCGGUagGCg -3'
miRNA:   3'- cCGCUGgau----UAGUUCCG--GCGCUAg-CG- -5'
12977 5' -53.3 NC_003387.1 + 32739 0.66 0.834576
Target:  5'- cGGUGGCCUcggcGAUUcGGGCUGUcaacucGAUgCGCa -3'
miRNA:   3'- -CCGCUGGA----UUAGuUCCGGCG------CUA-GCG- -5'
12977 5' -53.3 NC_003387.1 + 48810 0.66 0.834576
Target:  5'- cGGCGGCC--AUCGuc-CCGCcGGUCGUg -3'
miRNA:   3'- -CCGCUGGauUAGUuccGGCG-CUAGCG- -5'
12977 5' -53.3 NC_003387.1 + 29695 0.66 0.834576
Target:  5'- cGUGGCCgagGUCGAGGCgcucgGCGG-CGCc -3'
miRNA:   3'- cCGCUGGau-UAGUUCCGg----CGCUaGCG- -5'
12977 5' -53.3 NC_003387.1 + 45220 0.66 0.834576
Target:  5'- cGCGGCC-GAUCGuGGC-GUGGUCGg -3'
miRNA:   3'- cCGCUGGaUUAGUuCCGgCGCUAGCg -5'
12977 5' -53.3 NC_003387.1 + 23333 0.66 0.834576
Target:  5'- cGGCgGGCgaGAUCGAGGUCGUcaccggCGCc -3'
miRNA:   3'- -CCG-CUGgaUUAGUUCCGGCGcua---GCG- -5'
12977 5' -53.3 NC_003387.1 + 14930 0.66 0.834576
Target:  5'- uGCGACCg---CGGGuGCUGCGcccaggCGCg -3'
miRNA:   3'- cCGCUGGauuaGUUC-CGGCGCua----GCG- -5'
12977 5' -53.3 NC_003387.1 + 34440 0.66 0.831873
Target:  5'- gGGuCGGCgCUGGUCGAGuaguGCgGCGAaauguucguccagcUCGCg -3'
miRNA:   3'- -CC-GCUG-GAUUAGUUC----CGgCGCU--------------AGCG- -5'
12977 5' -53.3 NC_003387.1 + 33553 0.66 0.825491
Target:  5'- aGCGACCgug-C-GGGCCGCGcccUCGa -3'
miRNA:   3'- cCGCUGGauuaGuUCCGGCGCu--AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.