miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12977 5' -53.3 NC_003387.1 + 25934 0.66 0.843446
Target:  5'- cGCGGCCUcGUCGAGcggugcuggcGCUGC--UCGCu -3'
miRNA:   3'- cCGCUGGAuUAGUUC----------CGGCGcuAGCG- -5'
12977 5' -53.3 NC_003387.1 + 20158 0.66 0.825491
Target:  5'- cGCGAacCCgagggcGUCGAGGgCGCGGUUGa -3'
miRNA:   3'- cCGCU--GGau----UAGUUCCgGCGCUAGCg -5'
12977 5' -53.3 NC_003387.1 + 33553 0.66 0.825491
Target:  5'- aGCGACCgug-C-GGGCCGCGcccUCGa -3'
miRNA:   3'- cCGCUGGauuaGuUCCGGCGCu--AGCg -5'
12977 5' -53.3 NC_003387.1 + 16550 0.66 0.825491
Target:  5'- aGGUGGCa-GAUCGGGGCgGUGA--GCa -3'
miRNA:   3'- -CCGCUGgaUUAGUUCCGgCGCUagCG- -5'
12977 5' -53.3 NC_003387.1 + 7679 0.66 0.824571
Target:  5'- cGGCGACCUGcuccucgGUCAGGuCUGacuuGAUCaGCa -3'
miRNA:   3'- -CCGCUGGAU-------UAGUUCcGGCg---CUAG-CG- -5'
12977 5' -53.3 NC_003387.1 + 22054 0.66 0.816198
Target:  5'- uGCGACCgGGUCGGGGgCGUuucUCGUu -3'
miRNA:   3'- cCGCUGGaUUAGUUCCgGCGcu-AGCG- -5'
12977 5' -53.3 NC_003387.1 + 17485 0.66 0.816198
Target:  5'- cGGCGuACUUG--CGGGcGCCGCGGcCGUa -3'
miRNA:   3'- -CCGC-UGGAUuaGUUC-CGGCGCUaGCG- -5'
12977 5' -53.3 NC_003387.1 + 4568 0.66 0.816198
Target:  5'- cGCGACCg---CGcGGGCCuCGGUgGCg -3'
miRNA:   3'- cCGCUGGauuaGU-UCCGGcGCUAgCG- -5'
12977 5' -53.3 NC_003387.1 + 18578 0.66 0.815258
Target:  5'- gGGuCGACCcaggcGUCAGGGUCGCccgccucGGUgGCg -3'
miRNA:   3'- -CC-GCUGGau---UAGUUCCGGCG-------CUAgCG- -5'
12977 5' -53.3 NC_003387.1 + 25421 0.66 0.825491
Target:  5'- cGGCGACgCggcucUCAAgGGCCGCcagUGCg -3'
miRNA:   3'- -CCGCUG-Gauu--AGUU-CCGGCGcuaGCG- -5'
12977 5' -53.3 NC_003387.1 + 25465 0.66 0.825491
Target:  5'- cGCGACCagg-CAugccGGGCCGCcucGAcCGCg -3'
miRNA:   3'- cCGCUGGauuaGU----UCCGGCG---CUaGCG- -5'
12977 5' -53.3 NC_003387.1 + 48410 0.66 0.825491
Target:  5'- cGGCGuugaGCCacugCcGGGUCGCGGUgCGCu -3'
miRNA:   3'- -CCGC----UGGauuaGuUCCGGCGCUA-GCG- -5'
12977 5' -53.3 NC_003387.1 + 16109 0.66 0.843446
Target:  5'- cGGCGGCCag--CA--GCCGCGAgUCGa -3'
miRNA:   3'- -CCGCUGGauuaGUucCGGCGCU-AGCg -5'
12977 5' -53.3 NC_003387.1 + 6943 0.66 0.843446
Target:  5'- cGCGGCCUGcgCAgcggcGGGCagGCGccacagCGCg -3'
miRNA:   3'- cCGCUGGAUuaGU-----UCCGg-CGCua----GCG- -5'
12977 5' -53.3 NC_003387.1 + 2975 0.66 0.843446
Target:  5'- --gGGCCUcgcUCGGGGCCucGCGAggCGCu -3'
miRNA:   3'- ccgCUGGAuu-AGUUCCGG--CGCUa-GCG- -5'
12977 5' -53.3 NC_003387.1 + 17356 0.66 0.842569
Target:  5'- aGGCGACggcGAUCAGGuGCgGCGAgccugucUCGg -3'
miRNA:   3'- -CCGCUGga-UUAGUUC-CGgCGCU-------AGCg -5'
12977 5' -53.3 NC_003387.1 + 23333 0.66 0.834576
Target:  5'- cGGCgGGCgaGAUCGAGGUCGUcaccggCGCc -3'
miRNA:   3'- -CCG-CUGgaUUAGUUCCGGCGcua---GCG- -5'
12977 5' -53.3 NC_003387.1 + 14930 0.66 0.834576
Target:  5'- uGCGACCg---CGGGuGCUGCGcccaggCGCg -3'
miRNA:   3'- cCGCUGGauuaGUUC-CGGCGCua----GCG- -5'
12977 5' -53.3 NC_003387.1 + 3822 0.66 0.834576
Target:  5'- cGCGACaacgaucGUCAGGGCggCGCGGUagGCg -3'
miRNA:   3'- cCGCUGgau----UAGUUCCG--GCGCUAg-CG- -5'
12977 5' -53.3 NC_003387.1 + 34440 0.66 0.831873
Target:  5'- gGGuCGGCgCUGGUCGAGuaguGCgGCGAaauguucguccagcUCGCg -3'
miRNA:   3'- -CC-GCUG-GAUUAGUUC----CGgCGCU--------------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.