miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12978 3' -53.4 NC_003387.1 + 50850 0.66 0.836017
Target:  5'- uGAUcgccaUGCGUCaACGuGuCGGCGUUGACGc -3'
miRNA:   3'- gCUG-----ACGCAGcUGC-C-GCUGUAACUGU- -5'
12978 3' -53.4 NC_003387.1 + 43457 0.66 0.836017
Target:  5'- -aGCUGCugacCGGCGGCGACGUccugucggGGCGg -3'
miRNA:   3'- gcUGACGca--GCUGCCGCUGUAa-------CUGU- -5'
12978 3' -53.4 NC_003387.1 + 22499 0.66 0.826972
Target:  5'- gCGACgGCcUCGGCGGCgcgcucGACGUcGGCGu -3'
miRNA:   3'- -GCUGaCGcAGCUGCCG------CUGUAaCUGU- -5'
12978 3' -53.4 NC_003387.1 + 51735 0.66 0.826972
Target:  5'- cCGACcccggucgaGCGccUCGGCGGCGGCAUacACAa -3'
miRNA:   3'- -GCUGa--------CGC--AGCUGCCGCUGUAacUGU- -5'
12978 3' -53.4 NC_003387.1 + 52274 0.66 0.826972
Target:  5'- uCGGCcGcCG-CGGCGGCGACA--GACu -3'
miRNA:   3'- -GCUGaC-GCaGCUGCCGCUGUaaCUGu -5'
12978 3' -53.4 NC_003387.1 + 41270 0.66 0.826972
Target:  5'- uGACcgUGCGcccccUCGACGGCGACGa----- -3'
miRNA:   3'- gCUG--ACGC-----AGCUGCCGCUGUaacugu -5'
12978 3' -53.4 NC_003387.1 + 14922 0.66 0.826972
Target:  5'- aCGGCUGCG-CGGCuaccGGCG-CAgcGGCGc -3'
miRNA:   3'- -GCUGACGCaGCUG----CCGCuGUaaCUGU- -5'
12978 3' -53.4 NC_003387.1 + 19683 0.66 0.826972
Target:  5'- ----gGCGUCGACGGCu-CGUUcGACGc -3'
miRNA:   3'- gcugaCGCAGCUGCCGcuGUAA-CUGU- -5'
12978 3' -53.4 NC_003387.1 + 36889 0.66 0.817719
Target:  5'- cCGACgggcaccGCGUCGgcgucacaaccgGCGGCGACGc-GGCAc -3'
miRNA:   3'- -GCUGa------CGCAGC------------UGCCGCUGUaaCUGU- -5'
12978 3' -53.4 NC_003387.1 + 632 0.66 0.817719
Target:  5'- gGGCaGCGUCGcCGccGCGGCAgcGACGc -3'
miRNA:   3'- gCUGaCGCAGCuGC--CGCUGUaaCUGU- -5'
12978 3' -53.4 NC_003387.1 + 13642 0.66 0.812072
Target:  5'- cCGGCcacCGUCGGCGGCGGCucggucgccgagGGCGc -3'
miRNA:   3'- -GCUGac-GCAGCUGCCGCUGuaa---------CUGU- -5'
12978 3' -53.4 NC_003387.1 + 26588 0.66 0.808269
Target:  5'- aGGCcGCG-CGAgCGGCGACg--GACGc -3'
miRNA:   3'- gCUGaCGCaGCU-GCCGCUGuaaCUGU- -5'
12978 3' -53.4 NC_003387.1 + 37472 0.66 0.79863
Target:  5'- cCGACUuC-UCGGCGGCGACcgUGcCu -3'
miRNA:   3'- -GCUGAcGcAGCUGCCGCUGuaACuGu -5'
12978 3' -53.4 NC_003387.1 + 1750 0.67 0.788815
Target:  5'- uCGACaGCaugagccCGGCGGCGGCGcUGGCGc -3'
miRNA:   3'- -GCUGaCGca-----GCUGCCGCUGUaACUGU- -5'
12978 3' -53.4 NC_003387.1 + 10052 0.67 0.778834
Target:  5'- gGGCgcgGUGUCGgccgguaucacgGCGGCGACcagGACGa -3'
miRNA:   3'- gCUGa--CGCAGC------------UGCCGCUGuaaCUGU- -5'
12978 3' -53.4 NC_003387.1 + 46524 0.67 0.768699
Target:  5'- gCGACUGCaccaACGGCGGCG-UGACc -3'
miRNA:   3'- -GCUGACGcagcUGCCGCUGUaACUGu -5'
12978 3' -53.4 NC_003387.1 + 38521 0.67 0.737483
Target:  5'- gCGGCaagugaGCGcCGACGGCGuCAUggUGGCGc -3'
miRNA:   3'- -GCUGa-----CGCaGCUGCCGCuGUA--ACUGU- -5'
12978 3' -53.4 NC_003387.1 + 2589 0.68 0.726848
Target:  5'- aCGGCaguucUGCGUa-ACGGCGAUcgUGACc -3'
miRNA:   3'- -GCUG-----ACGCAgcUGCCGCUGuaACUGu -5'
12978 3' -53.4 NC_003387.1 + 18192 0.68 0.726847
Target:  5'- uCGGCUGCGaggugCGccuCGGCGACGc-GACGa -3'
miRNA:   3'- -GCUGACGCa----GCu--GCCGCUGUaaCUGU- -5'
12978 3' -53.4 NC_003387.1 + 39922 0.68 0.726847
Target:  5'- aCGACUGCgGUCGuugcgaGGCGcGCAUUGcgGCGa -3'
miRNA:   3'- -GCUGACG-CAGCug----CCGC-UGUAAC--UGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.