miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12978 5' -61.2 NC_003387.1 + 2699 0.66 0.399036
Target:  5'- cUCGgCGAGGuuGUgcucggCGACGCGGg -3'
miRNA:   3'- uAGCgGCUCCggCGaca---GCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 21683 0.66 0.399036
Target:  5'- uUCGCCGAcgcccuGGCCGCcucggCGAgCGCGGc -3'
miRNA:   3'- uAGCGGCU------CCGGCGaca--GCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 39619 0.66 0.390174
Target:  5'- gAUCGCCGAGGUgGCgGcaugagccUCGACcCGGUg -3'
miRNA:   3'- -UAGCGGCUCCGgCGaC--------AGCUGcGCUA- -5'
12978 5' -61.2 NC_003387.1 + 43836 0.66 0.390174
Target:  5'- --gGgCGAGGCCGagGUCGGgGCGGUg -3'
miRNA:   3'- uagCgGCUCCGGCgaCAGCUgCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 2249 0.66 0.390174
Target:  5'- aGUUGCCGAcgaccucgcgGGCCGggGUCGGCuCGAc -3'
miRNA:   3'- -UAGCGGCU----------CCGGCgaCAGCUGcGCUa -5'
12978 5' -61.2 NC_003387.1 + 13468 0.66 0.390174
Target:  5'- cUCGCCGAGGUCGaacUCGACGg--- -3'
miRNA:   3'- uAGCGGCUCCGGCgacAGCUGCgcua -5'
12978 5' -61.2 NC_003387.1 + 11433 0.66 0.390174
Target:  5'- cUCGUCGAGGUuuCGCUcGUCGcCGuCGAg -3'
miRNA:   3'- uAGCGGCUCCG--GCGA-CAGCuGC-GCUa -5'
12978 5' -61.2 NC_003387.1 + 17178 0.66 0.381443
Target:  5'- -gCGCCGccuGGGCgGCga-CGGCGCGAa -3'
miRNA:   3'- uaGCGGC---UCCGgCGacaGCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 40488 0.66 0.381443
Target:  5'- --aGCCGAGcGCCGCUG-CGcugGCGAc -3'
miRNA:   3'- uagCGGCUC-CGGCGACaGCug-CGCUa -5'
12978 5' -61.2 NC_003387.1 + 29978 0.66 0.381443
Target:  5'- --gGCCGAGGCCaagGCgagCGAcCGCGAg -3'
miRNA:   3'- uagCGGCUCCGG---CGacaGCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 35805 0.66 0.381443
Target:  5'- -gUGCCucGG-CGCcGUCGGCGCGAUg -3'
miRNA:   3'- uaGCGGcuCCgGCGaCAGCUGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 37430 0.66 0.381442
Target:  5'- uGUCGCCGGuGCCGgUGUCG-UGCa-- -3'
miRNA:   3'- -UAGCGGCUcCGGCgACAGCuGCGcua -5'
12978 5' -61.2 NC_003387.1 + 51124 0.66 0.381442
Target:  5'- aAUCGCC-AGGCCGUgcgacaUGUCGAcCGCc-- -3'
miRNA:   3'- -UAGCGGcUCCGGCG------ACAGCU-GCGcua -5'
12978 5' -61.2 NC_003387.1 + 18389 0.66 0.381442
Target:  5'- -aCGUCGAucGGCUGCgacggGUCGGcCGCGGg -3'
miRNA:   3'- uaGCGGCU--CCGGCGa----CAGCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 23263 0.66 0.381442
Target:  5'- cUCGCUGGcGCCGUUcUCGAuCGCGAg -3'
miRNA:   3'- uAGCGGCUcCGGCGAcAGCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 14317 0.66 0.381442
Target:  5'- -cCGCuCGGGGUgGUUGUCGAgGuCGAg -3'
miRNA:   3'- uaGCG-GCUCCGgCGACAGCUgC-GCUa -5'
12978 5' -61.2 NC_003387.1 + 26932 0.66 0.372842
Target:  5'- uUCGCCG-GGCUGgcCUGUCGGCGg--- -3'
miRNA:   3'- uAGCGGCuCCGGC--GACAGCUGCgcua -5'
12978 5' -61.2 NC_003387.1 + 26069 0.66 0.372842
Target:  5'- uUCG-CGAGGCUGCgccCGGCGUGAc -3'
miRNA:   3'- uAGCgGCUCCGGCGacaGCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 29675 0.66 0.372842
Target:  5'- cUCGCCGAcGUCGaC-GUCGACGUGGc -3'
miRNA:   3'- uAGCGGCUcCGGC-GaCAGCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 34528 0.66 0.369439
Target:  5'- cGUCGCCGAGGCgcaccucgcaGCcgaucgucagcggGUCGACGuCGAa -3'
miRNA:   3'- -UAGCGGCUCCGg---------CGa------------CAGCUGC-GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.