miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12978 5' -61.2 NC_003387.1 + 2249 0.66 0.390174
Target:  5'- aGUUGCCGAcgaccucgcgGGCCGggGUCGGCuCGAc -3'
miRNA:   3'- -UAGCGGCU----------CCGGCgaCAGCUGcGCUa -5'
12978 5' -61.2 NC_003387.1 + 42047 0.66 0.347843
Target:  5'- -cCGCCGAGGCgGCcgugGUCGcagccGCGuCGAg -3'
miRNA:   3'- uaGCGGCUCCGgCGa---CAGC-----UGC-GCUa -5'
12978 5' -61.2 NC_003387.1 + 26799 0.66 0.347843
Target:  5'- cUCGaCGAGGCCGCgcuggugGUCGgugaGCGCGc- -3'
miRNA:   3'- uAGCgGCUCCGGCGa------CAGC----UGCGCua -5'
12978 5' -61.2 NC_003387.1 + 27552 0.66 0.363535
Target:  5'- cUCGCUGAccgccucgGGCCGCUGacacgagccccgaUCGgcuGCGCGGUg -3'
miRNA:   3'- uAGCGGCU--------CCGGCGAC-------------AGC---UGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 14487 0.66 0.364375
Target:  5'- cUCGgCGAGGCCacuaagggcgcGCUGUCGAU-CGAc -3'
miRNA:   3'- uAGCgGCUCCGG-----------CGACAGCUGcGCUa -5'
12978 5' -61.2 NC_003387.1 + 28409 0.66 0.364375
Target:  5'- gAUCGCCGAgcagacccGGCUGCUG-CGGCGg--- -3'
miRNA:   3'- -UAGCGGCU--------CCGGCGACaGCUGCgcua -5'
12978 5' -61.2 NC_003387.1 + 26069 0.66 0.372842
Target:  5'- uUCG-CGAGGCUGCgccCGGCGUGAc -3'
miRNA:   3'- uAGCgGCUCCGGCGacaGCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 26932 0.66 0.372842
Target:  5'- uUCGCCG-GGCUGgcCUGUCGGCGg--- -3'
miRNA:   3'- uAGCGGCuCCGGC--GACAGCUGCgcua -5'
12978 5' -61.2 NC_003387.1 + 29675 0.66 0.372842
Target:  5'- cUCGCCGAcGUCGaC-GUCGACGUGGc -3'
miRNA:   3'- uAGCGGCUcCGGC-GaCAGCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 3169 0.66 0.356041
Target:  5'- cUCGgCGAGGCCGUaaUCGGgGUGAg -3'
miRNA:   3'- uAGCgGCUCCGGCGacAGCUgCGCUa -5'
12978 5' -61.2 NC_003387.1 + 31570 0.66 0.364375
Target:  5'- cUCGCCGA-GCCGCUGcUUGAcCGCc-- -3'
miRNA:   3'- uAGCGGCUcCGGCGAC-AGCU-GCGcua -5'
12978 5' -61.2 NC_003387.1 + 43355 0.66 0.364375
Target:  5'- gGUCGCCucGGCCGCcaccggcucGUCGACGUc-- -3'
miRNA:   3'- -UAGCGGcuCCGGCGa--------CAGCUGCGcua -5'
12978 5' -61.2 NC_003387.1 + 13468 0.66 0.390174
Target:  5'- cUCGCCGAGGUCGaacUCGACGg--- -3'
miRNA:   3'- uAGCGGCUCCGGCgacAGCUGCgcua -5'
12978 5' -61.2 NC_003387.1 + 11433 0.66 0.390174
Target:  5'- cUCGUCGAGGUuuCGCUcGUCGcCGuCGAg -3'
miRNA:   3'- uAGCGGCUCCG--GCGA-CAGCuGC-GCUa -5'
12978 5' -61.2 NC_003387.1 + 37430 0.66 0.381442
Target:  5'- uGUCGCCGGuGCCGgUGUCG-UGCa-- -3'
miRNA:   3'- -UAGCGGCUcCGGCgACAGCuGCGcua -5'
12978 5' -61.2 NC_003387.1 + 18389 0.66 0.381442
Target:  5'- -aCGUCGAucGGCUGCgacggGUCGGcCGCGGg -3'
miRNA:   3'- uaGCGGCU--CCGGCGa----CAGCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 51124 0.66 0.381442
Target:  5'- aAUCGCC-AGGCCGUgcgacaUGUCGAcCGCc-- -3'
miRNA:   3'- -UAGCGGcUCCGGCG------ACAGCU-GCGcua -5'
12978 5' -61.2 NC_003387.1 + 23263 0.66 0.381442
Target:  5'- cUCGCUGGcGCCGUUcUCGAuCGCGAg -3'
miRNA:   3'- uAGCGGCUcCGGCGAcAGCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 14317 0.66 0.381442
Target:  5'- -cCGCuCGGGGUgGUUGUCGAgGuCGAg -3'
miRNA:   3'- uaGCG-GCUCCGgCGACAGCUgC-GCUa -5'
12978 5' -61.2 NC_003387.1 + 34528 0.66 0.369439
Target:  5'- cGUCGCCGAGGCgcaccucgcaGCcgaucgucagcggGUCGACGuCGAa -3'
miRNA:   3'- -UAGCGGCUCCGg---------CGa------------CAGCUGC-GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.