miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12978 5' -61.2 NC_003387.1 + 31570 0.66 0.364375
Target:  5'- cUCGCCGA-GCCGCUGcUUGAcCGCc-- -3'
miRNA:   3'- uAGCGGCUcCGGCGAC-AGCU-GCGcua -5'
12978 5' -61.2 NC_003387.1 + 28409 0.66 0.364375
Target:  5'- gAUCGCCGAgcagacccGGCUGCUG-CGGCGg--- -3'
miRNA:   3'- -UAGCGGCU--------CCGGCGACaGCUGCgcua -5'
12978 5' -61.2 NC_003387.1 + 43355 0.66 0.364375
Target:  5'- gGUCGCCucGGCCGCcaccggcucGUCGACGUc-- -3'
miRNA:   3'- -UAGCGGcuCCGGCGa--------CAGCUGCGcua -5'
12978 5' -61.2 NC_003387.1 + 14487 0.66 0.364375
Target:  5'- cUCGgCGAGGCCacuaagggcgcGCUGUCGAU-CGAc -3'
miRNA:   3'- uAGCgGCUCCGG-----------CGACAGCUGcGCUa -5'
12978 5' -61.2 NC_003387.1 + 27552 0.66 0.363535
Target:  5'- cUCGCUGAccgccucgGGCCGCUGacacgagccccgaUCGgcuGCGCGGUg -3'
miRNA:   3'- uAGCGGCU--------CCGGCGAC-------------AGC---UGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 3169 0.66 0.356041
Target:  5'- cUCGgCGAGGCCGUaaUCGGgGUGAg -3'
miRNA:   3'- uAGCgGCUCCGGCGacAGCUgCGCUa -5'
12978 5' -61.2 NC_003387.1 + 26799 0.66 0.347843
Target:  5'- cUCGaCGAGGCCGCgcuggugGUCGgugaGCGCGc- -3'
miRNA:   3'- uAGCgGCUCCGGCGa------CAGC----UGCGCua -5'
12978 5' -61.2 NC_003387.1 + 42047 0.66 0.347843
Target:  5'- -cCGCCGAGGCgGCcgugGUCGcagccGCGuCGAg -3'
miRNA:   3'- uaGCGGCUCCGgCGa---CAGC-----UGC-GCUa -5'
12978 5' -61.2 NC_003387.1 + 43665 0.67 0.33978
Target:  5'- aGUCGCCGAGGagg--G-CGACGCGAUc -3'
miRNA:   3'- -UAGCGGCUCCggcgaCaGCUGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 14166 0.67 0.33978
Target:  5'- cUCGCCGggccGGGCCGCg---GGCGUGAg -3'
miRNA:   3'- uAGCGGC----UCCGGCGacagCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 46046 0.67 0.33978
Target:  5'- cGUCGUCGAGGaucugcagcgcaCCGCgcuugagcggGUCGACGaCGAg -3'
miRNA:   3'- -UAGCGGCUCC------------GGCGa---------CAGCUGC-GCUa -5'
12978 5' -61.2 NC_003387.1 + 21742 0.67 0.331854
Target:  5'- cGUCGCCGAGGCgcucggcgucagCGCcacCGACGCGc- -3'
miRNA:   3'- -UAGCGGCUCCG------------GCGacaGCUGCGCua -5'
12978 5' -61.2 NC_003387.1 + 15831 0.67 0.331854
Target:  5'- cGUCaCCGAGGCgaUGCUGaaaGACGCGGg -3'
miRNA:   3'- -UAGcGGCUCCG--GCGACag-CUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 7827 0.67 0.331854
Target:  5'- --gGCCGAGGUCGCc--CGGCGCGc- -3'
miRNA:   3'- uagCGGCUCCGGCGacaGCUGCGCua -5'
12978 5' -61.2 NC_003387.1 + 15807 0.67 0.331853
Target:  5'- --aGCgGGGuGCCGCUGUCGcCGcCGGUu -3'
miRNA:   3'- uagCGgCUC-CGGCGACAGCuGC-GCUA- -5'
12978 5' -61.2 NC_003387.1 + 28450 0.67 0.324064
Target:  5'- -aCGCCGAGGCgGCggcagaucgCGGCGCa-- -3'
miRNA:   3'- uaGCGGCUCCGgCGaca------GCUGCGcua -5'
12978 5' -61.2 NC_003387.1 + 44014 0.67 0.316411
Target:  5'- uGUCGUCGA-GCgGCUcGUCGACGuCGGUc -3'
miRNA:   3'- -UAGCGGCUcCGgCGA-CAGCUGC-GCUA- -5'
12978 5' -61.2 NC_003387.1 + 21664 0.67 0.316411
Target:  5'- cUCGCCGucGCCGgUGccaUCGGCGcCGGUg -3'
miRNA:   3'- uAGCGGCucCGGCgAC---AGCUGC-GCUA- -5'
12978 5' -61.2 NC_003387.1 + 12822 0.67 0.308895
Target:  5'- cGUCGCCGGGGCa---GUUGugGUGAg -3'
miRNA:   3'- -UAGCGGCUCCGgcgaCAGCugCGCUa -5'
12978 5' -61.2 NC_003387.1 + 33411 0.67 0.301517
Target:  5'- -aCGCgCGAGGCCGUUGUgCGGCuGUGc- -3'
miRNA:   3'- uaGCG-GCUCCGGCGACA-GCUG-CGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.