miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12978 5' -61.2 NC_003387.1 + 41059 1.03 0.00064
Target:  5'- gAUCGCCGAGGCCGCUGUCGACGCGAUc -3'
miRNA:   3'- -UAGCGGCUCCGGCGACAGCUGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 50650 0.69 0.247358
Target:  5'- -cCGCCGAGGaCCGC-GUCG-CGCa-- -3'
miRNA:   3'- uaGCGGCUCC-GGCGaCAGCuGCGcua -5'
12978 5' -61.2 NC_003387.1 + 22522 0.69 0.253662
Target:  5'- -cCGCCGcgacccuggcccAGGCCgaggGCUGgcUCGACGCGGUg -3'
miRNA:   3'- uaGCGGC------------UCCGG----CGAC--AGCUGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 21683 0.66 0.399036
Target:  5'- uUCGCCGAcgcccuGGCCGCcucggCGAgCGCGGc -3'
miRNA:   3'- uAGCGGCU------CCGGCGaca--GCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 10045 0.71 0.167626
Target:  5'- -gCGCCGAGGgCGCggUGUCGGC-CGGUa -3'
miRNA:   3'- uaGCGGCUCCgGCG--ACAGCUGcGCUA- -5'
12978 5' -61.2 NC_003387.1 + 49569 0.71 0.176749
Target:  5'- cUCGCCGAGGugcgcCCGCUGcCGG-GCGGUg -3'
miRNA:   3'- uAGCGGCUCC-----GGCGACaGCUgCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 37286 0.71 0.186311
Target:  5'- -gCGCCu-GGCgCGCUcGUCGGCGCGGUc -3'
miRNA:   3'- uaGCGGcuCCG-GCGA-CAGCUGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 2045 0.7 0.191261
Target:  5'- cGUCGCCGAgcuGGCCGCgGUggCGGCGCc-- -3'
miRNA:   3'- -UAGCGGCU---CCGGCGaCA--GCUGCGcua -5'
12978 5' -61.2 NC_003387.1 + 33476 0.7 0.206808
Target:  5'- aGUCGCCGAGGCg---GUCGGCGCc-- -3'
miRNA:   3'- -UAGCGGCUCCGgcgaCAGCUGCGcua -5'
12978 5' -61.2 NC_003387.1 + 27914 0.69 0.229225
Target:  5'- -aCGCCGAGcuGCUGCgccagGUCGGcCGCGAc -3'
miRNA:   3'- uaGCGGCUC--CGGCGa----CAGCU-GCGCUa -5'
12978 5' -61.2 NC_003387.1 + 9409 0.7 0.21777
Target:  5'- gAUCGCCGAggagugGGCCGacgaGUaCGACGCGGg -3'
miRNA:   3'- -UAGCGGCU------CCGGCga--CA-GCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 39157 0.7 0.206808
Target:  5'- -gCGCCGAGGgCGUguacugGUCGguGCGCGAc -3'
miRNA:   3'- uaGCGGCUCCgGCGa-----CAGC--UGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 13665 0.81 0.034201
Target:  5'- gGUCGCCGAGGgCGCcGUCGACGCu-- -3'
miRNA:   3'- -UAGCGGCUCCgGCGaCAGCUGCGcua -5'
12978 5' -61.2 NC_003387.1 + 38930 0.69 0.229225
Target:  5'- -gCGCaaCGuGGCCGCUGaucugcggCGACGCGAa -3'
miRNA:   3'- uaGCG--GCuCCGGCGACa-------GCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 7308 0.78 0.055534
Target:  5'- cUCGCCGGGGCCGUaccUGUCGGCuGCGc- -3'
miRNA:   3'- uAGCGGCUCCGGCG---ACAGCUG-CGCua -5'
12978 5' -61.2 NC_003387.1 + 17046 0.7 0.201507
Target:  5'- cUCGCCGGGcGUCGUcGagGACGCGAUc -3'
miRNA:   3'- uAGCGGCUC-CGGCGaCagCUGCGCUA- -5'
12978 5' -61.2 NC_003387.1 + 21296 0.69 0.229225
Target:  5'- cGUCGUCGAGGCCGUcGagcagUGGCGCGu- -3'
miRNA:   3'- -UAGCGGCUCCGGCGaCa----GCUGCGCua -5'
12978 5' -61.2 NC_003387.1 + 3314 0.69 0.253662
Target:  5'- -gCGCCGAGG-UGCUGU-GGCGUGAc -3'
miRNA:   3'- uaGCGGCUCCgGCGACAgCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 32264 0.75 0.08469
Target:  5'- cGUCGCCGAGGCCGacaaggcgUGggGGCGCGAg -3'
miRNA:   3'- -UAGCGGCUCCGGCg-------ACagCUGCGCUa -5'
12978 5' -61.2 NC_003387.1 + 30232 0.71 0.176749
Target:  5'- -cCGCCGAGGCCGUcgcccgGUaCGACGCc-- -3'
miRNA:   3'- uaGCGGCUCCGGCGa-----CA-GCUGCGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.