miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12979 3' -61.1 NC_003387.1 + 2001 0.66 0.421358
Target:  5'- cGUCGagguaACGCUcGACCuuGUGCGCgCCCa -3'
miRNA:   3'- -CAGCac---UGCGA-CUGG--CACGCGgGGGa -5'
12979 3' -61.1 NC_003387.1 + 50487 0.66 0.412268
Target:  5'- cGUCGgcaacuggcUGACGCUGGCCGccugaccgGCGagcacgaggcaCCCCUg -3'
miRNA:   3'- -CAGC---------ACUGCGACUGGCa-------CGCg----------GGGGA- -5'
12979 3' -61.1 NC_003387.1 + 16330 0.66 0.412268
Target:  5'- -gUGUcGAUGUUGACCGcgGCGaCCUCCa -3'
miRNA:   3'- caGCA-CUGCGACUGGCa-CGC-GGGGGa -5'
12979 3' -61.1 NC_003387.1 + 27951 0.66 0.397979
Target:  5'- gGUCGgGGCGCucggcgugcucggcuUGGCCGgugccguugcgGCGCCCUCg -3'
miRNA:   3'- -CAGCaCUGCG---------------ACUGGCa----------CGCGGGGGa -5'
12979 3' -61.1 NC_003387.1 + 15075 0.66 0.394457
Target:  5'- gGUCGUGACgGCgacGCUGUuggaGCCCCCg -3'
miRNA:   3'- -CAGCACUG-CGac-UGGCAcg--CGGGGGa -5'
12979 3' -61.1 NC_003387.1 + 15830 0.66 0.377151
Target:  5'- gGUUGUGACGCcGACgCG-GUGCCCgUCg -3'
miRNA:   3'- -CAGCACUGCGaCUG-GCaCGCGGG-GGa -5'
12979 3' -61.1 NC_003387.1 + 38448 0.67 0.351356
Target:  5'- aGUCGacgcgcucgggcuUGGCGCcGAUCGUguaaGCGCCCUCa -3'
miRNA:   3'- -CAGC-------------ACUGCGaCUGGCA----CGCGGGGGa -5'
12979 3' -61.1 NC_003387.1 + 2586 0.67 0.336176
Target:  5'- cGUCGgucGACGcCUGGCCGcaguaCGCCCUCg -3'
miRNA:   3'- -CAGCa--CUGC-GACUGGCac---GCGGGGGa -5'
12979 3' -61.1 NC_003387.1 + 23884 0.67 0.328381
Target:  5'- --gGUGugGCUGGCCGacgugcUGCGCgCCg- -3'
miRNA:   3'- cagCACugCGACUGGC------ACGCGgGGga -5'
12979 3' -61.1 NC_003387.1 + 18316 0.68 0.32072
Target:  5'- --gGUGGCGCccggcaacggcgUGGCCGUcGUGCCCgCCg -3'
miRNA:   3'- cagCACUGCG------------ACUGGCA-CGCGGG-GGa -5'
12979 3' -61.1 NC_003387.1 + 44622 0.68 0.298546
Target:  5'- -cCGUGGCGC-GAgCGUGUGgCCCUg -3'
miRNA:   3'- caGCACUGCGaCUgGCACGCgGGGGa -5'
12979 3' -61.1 NC_003387.1 + 40258 0.71 0.190024
Target:  5'- cGUCGUGACcguGCaGACCGaucUGCGCgaCCCCUc -3'
miRNA:   3'- -CAGCACUG---CGaCUGGC---ACGCG--GGGGA- -5'
12979 3' -61.1 NC_003387.1 + 30970 0.72 0.166724
Target:  5'- cGUCgGUGGCGCUGacGCCGaGCGCCUCg- -3'
miRNA:   3'- -CAG-CACUGCGAC--UGGCaCGCGGGGga -5'
12979 3' -61.1 NC_003387.1 + 36618 0.72 0.162812
Target:  5'- cUCGcGGCuGCUGGCCGccgcgaugcccgacgGCGCCCCCg -3'
miRNA:   3'- cAGCaCUG-CGACUGGCa--------------CGCGGGGGa -5'
12979 3' -61.1 NC_003387.1 + 2007 0.72 0.158143
Target:  5'- -cCGUGACGCUGGCCcugcucgGUGCCgCCg -3'
miRNA:   3'- caGCACUGCGACUGGca-----CGCGGgGGa -5'
12979 3' -61.1 NC_003387.1 + 48093 0.73 0.138413
Target:  5'- --gGUGGCGCUG-CCGcUGCGCCCgCg -3'
miRNA:   3'- cagCACUGCGACuGGC-ACGCGGGgGa -5'
12979 3' -61.1 NC_003387.1 + 29742 0.74 0.124283
Target:  5'- cGUCGUcGGCGCcgcccgacacgaUGACCGggGCGCCCCa- -3'
miRNA:   3'- -CAGCA-CUGCG------------ACUGGCa-CGCGGGGga -5'
12979 3' -61.1 NC_003387.1 + 46561 0.77 0.067851
Target:  5'- cGUCGUGACGCUGAUCGgcuaCGCCgaCCCUc -3'
miRNA:   3'- -CAGCACUGCGACUGGCac--GCGG--GGGA- -5'
12979 3' -61.1 NC_003387.1 + 41259 1.06 0.000434
Target:  5'- gGUCGUGACGCUGACCGUGCGCCCCCUc -3'
miRNA:   3'- -CAGCACUGCGACUGGCACGCGGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.