miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12979 5' -53.1 NC_003387.1 + 36522 0.66 0.856133
Target:  5'- uCGAGUGcucGGCCgugaugaUCGACGAGUGCucggugucgcggaauACCa -3'
miRNA:   3'- -GCUCGCu--UUGG-------AGCUGCUCGCGu--------------UGG- -5'
12979 5' -53.1 NC_003387.1 + 48290 0.66 0.856133
Target:  5'- cCGAcGCaGAGuucgccgcccGCCUCGACGAaaucgaggcggcGCGCGAgCg -3'
miRNA:   3'- -GCU-CG-CUU----------UGGAGCUGCU------------CGCGUUgG- -5'
12979 5' -53.1 NC_003387.1 + 32474 0.66 0.856133
Target:  5'- gCGGGCGuuugcgucGACCcCGGCGccguGGUGCGACg -3'
miRNA:   3'- -GCUCGCu-------UUGGaGCUGC----UCGCGUUGg -5'
12979 5' -53.1 NC_003387.1 + 29977 0.66 0.856133
Target:  5'- aGGcCGAGGCCaaGGCGAGCG--ACCg -3'
miRNA:   3'- gCUcGCUUUGGagCUGCUCGCguUGG- -5'
12979 5' -53.1 NC_003387.1 + 49590 0.66 0.856133
Target:  5'- cCGGGCGGuGGCCU-GGC-AGUGCuGCCg -3'
miRNA:   3'- -GCUCGCU-UUGGAgCUGcUCGCGuUGG- -5'
12979 5' -53.1 NC_003387.1 + 18191 0.66 0.856133
Target:  5'- uCGAGCGGG---UCGACG-G-GCAGCCc -3'
miRNA:   3'- -GCUCGCUUuggAGCUGCuCgCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 6830 0.66 0.856133
Target:  5'- uCGGGCGGcaggucGAUcgcccgCUCGgccGCGGcGCGCAGCCg -3'
miRNA:   3'- -GCUCGCU------UUG------GAGC---UGCU-CGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 7282 0.66 0.856133
Target:  5'- -cGGCGcAGGCC-CGGCGAgcuuGCGCAuguCCu -3'
miRNA:   3'- gcUCGC-UUUGGaGCUGCU----CGCGUu--GG- -5'
12979 5' -53.1 NC_003387.1 + 49367 0.66 0.856133
Target:  5'- -uGGUGAuGCCgUCGACGAcCGC-GCCa -3'
miRNA:   3'- gcUCGCUuUGG-AGCUGCUcGCGuUGG- -5'
12979 5' -53.1 NC_003387.1 + 25188 0.66 0.855292
Target:  5'- -cAGCGAggcucauacaggcAACCUCG-CG-GCgGCGGCCg -3'
miRNA:   3'- gcUCGCU-------------UUGGAGCuGCuCG-CGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 49394 0.66 0.851053
Target:  5'- aCGAGCGGgccucGgugucacgccacagcACCUCGGCgcccGAGUcgGCGGCCg -3'
miRNA:   3'- -GCUCGCU-----U---------------UGGAGCUG----CUCG--CGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 36722 0.66 0.847619
Target:  5'- uCGAGCugcccGGCCUCGacgccgucuGCGAGCGCcugggcgucACCg -3'
miRNA:   3'- -GCUCGcu---UUGGAGC---------UGCUCGCGu--------UGG- -5'
12979 5' -53.1 NC_003387.1 + 36448 0.66 0.847619
Target:  5'- aCGcGCGAGcAgCUCGcCcaGGCGCAGCCg -3'
miRNA:   3'- -GCuCGCUU-UgGAGCuGc-UCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 9019 0.66 0.847619
Target:  5'- uCGAGC---ACCU-GGCGGGCGCcgUCg -3'
miRNA:   3'- -GCUCGcuuUGGAgCUGCUCGCGuuGG- -5'
12979 5' -53.1 NC_003387.1 + 13120 0.66 0.847619
Target:  5'- -cGGCGAuccacucgucGGCCUCGcUGGuGCGCAGCg -3'
miRNA:   3'- gcUCGCU----------UUGGAGCuGCU-CGCGUUGg -5'
12979 5' -53.1 NC_003387.1 + 21784 0.66 0.847619
Target:  5'- -cAGCGGcgcacGAUCUgCGACGgcccGGUGCAGCCc -3'
miRNA:   3'- gcUCGCU-----UUGGA-GCUGC----UCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 4177 0.66 0.847619
Target:  5'- -uGGCacguGACCUCGGCGcGGUGCuucgGCCa -3'
miRNA:   3'- gcUCGcu--UUGGAGCUGC-UCGCGu---UGG- -5'
12979 5' -53.1 NC_003387.1 + 15354 0.66 0.838876
Target:  5'- gGGGCGccGCCgccCGACaGgugccgcagauAGCGCAGCCc -3'
miRNA:   3'- gCUCGCuuUGGa--GCUG-C-----------UCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 24909 0.66 0.838876
Target:  5'- aCGGGCGGuacuUCUCGuCGGGCaCcGCCg -3'
miRNA:   3'- -GCUCGCUuu--GGAGCuGCUCGcGuUGG- -5'
12979 5' -53.1 NC_003387.1 + 46362 0.66 0.838876
Target:  5'- gCGGcCGAGGCCaagcgCGACacgguGGGCGCAGCg -3'
miRNA:   3'- -GCUcGCUUUGGa----GCUG-----CUCGCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.