miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12979 5' -53.1 NC_003387.1 + 34125 0.66 0.838876
Target:  5'- aCGAGCGccACCgaGGCGGGCGac-CCu -3'
miRNA:   3'- -GCUCGCuuUGGagCUGCUCGCguuGG- -5'
12979 5' -53.1 NC_003387.1 + 15354 0.66 0.838876
Target:  5'- gGGGCGccGCCgccCGACaGgugccgcagauAGCGCAGCCc -3'
miRNA:   3'- gCUCGCuuUGGa--GCUG-C-----------UCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 24909 0.66 0.838876
Target:  5'- aCGGGCGGuacuUCUCGuCGGGCaCcGCCg -3'
miRNA:   3'- -GCUCGCUuu--GGAGCuGCUCGcGuUGG- -5'
12979 5' -53.1 NC_003387.1 + 46362 0.66 0.838876
Target:  5'- gCGGcCGAGGCCaagcgCGACacgguGGGCGCAGCg -3'
miRNA:   3'- -GCUcGCUUUGGa----GCUG-----CUCGCGUUGg -5'
12979 5' -53.1 NC_003387.1 + 36347 0.66 0.837989
Target:  5'- uCGAcuGCGAAacgacggGCCUgcaUGACG-GCGCAGCg -3'
miRNA:   3'- -GCU--CGCUU-------UGGA---GCUGCuCGCGUUGg -5'
12979 5' -53.1 NC_003387.1 + 48365 0.66 0.836209
Target:  5'- cCGAGCGc-GCCaagggcaaccacauUCGcaagcgggcCGGGCGCAGCCu -3'
miRNA:   3'- -GCUCGCuuUGG--------------AGCu--------GCUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 11671 0.66 0.836209
Target:  5'- -cAGCG--GCCUCGGCGAuCGCGugggugucaaugucGCCg -3'
miRNA:   3'- gcUCGCuuUGGAGCUGCUcGCGU--------------UGG- -5'
12979 5' -53.1 NC_003387.1 + 15153 0.66 0.829912
Target:  5'- --cGCGuacaccuACCUCGACGcGCGCcGCg -3'
miRNA:   3'- gcuCGCuu-----UGGAGCUGCuCGCGuUGg -5'
12979 5' -53.1 NC_003387.1 + 38091 0.66 0.829912
Target:  5'- --cGCGGcGGCCU-GACGGGCaccuGCGACCu -3'
miRNA:   3'- gcuCGCU-UUGGAgCUGCUCG----CGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 41031 0.66 0.829912
Target:  5'- -cAGCG-AGCC-CGACGAcCGCGGCg -3'
miRNA:   3'- gcUCGCuUUGGaGCUGCUcGCGUUGg -5'
12979 5' -53.1 NC_003387.1 + 30752 0.66 0.829912
Target:  5'- uCGGGCagcACCgUGuCGGGCGUGACCg -3'
miRNA:   3'- -GCUCGcuuUGGaGCuGCUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 22456 0.66 0.829912
Target:  5'- aCGAGUGGcuGCC-CGACcccGGCGcCGACCc -3'
miRNA:   3'- -GCUCGCUu-UGGaGCUGc--UCGC-GUUGG- -5'
12979 5' -53.1 NC_003387.1 + 31020 0.66 0.829912
Target:  5'- uCGGcGCGGGccGCgCUCGcCGAG-GCGGCCa -3'
miRNA:   3'- -GCU-CGCUU--UG-GAGCuGCUCgCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 2889 0.66 0.829912
Target:  5'- -cGGCaGGAACucgCUCGcCGGGCGCGGCa -3'
miRNA:   3'- gcUCG-CUUUG---GAGCuGCUCGCGUUGg -5'
12979 5' -53.1 NC_003387.1 + 34400 0.66 0.829912
Target:  5'- -cGGCGcGACCagCGACGA-CGCAcucGCCg -3'
miRNA:   3'- gcUCGCuUUGGa-GCUGCUcGCGU---UGG- -5'
12979 5' -53.1 NC_003387.1 + 7092 0.66 0.829912
Target:  5'- gGAGCaGAcgGACCUaaGCGAGCuGCucGCCg -3'
miRNA:   3'- gCUCG-CU--UUGGAgcUGCUCG-CGu-UGG- -5'
12979 5' -53.1 NC_003387.1 + 1718 0.66 0.829912
Target:  5'- uGAGCG-GGCCg-GGCG-GCGCAuCCc -3'
miRNA:   3'- gCUCGCuUUGGagCUGCuCGCGUuGG- -5'
12979 5' -53.1 NC_003387.1 + 29479 0.66 0.829912
Target:  5'- gCGAGCaGGgcacGGCCcgcgaGAUGGGCGuCGACCg -3'
miRNA:   3'- -GCUCG-CU----UUGGag---CUGCUCGC-GUUGG- -5'
12979 5' -53.1 NC_003387.1 + 22557 0.66 0.829004
Target:  5'- cCGAgGCGAucgcgcgGGCCUgGuCGAGgGUGGCCu -3'
miRNA:   3'- -GCU-CGCU-------UUGGAgCuGCUCgCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 49841 0.66 0.820739
Target:  5'- gCGAGCGAGuuccuGCCgauguaCGACGAGgaGUucGACCc -3'
miRNA:   3'- -GCUCGCUU-----UGGa-----GCUGCUCg-CG--UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.