miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12979 5' -53.1 NC_003387.1 + 41294 1.13 0.001014
Target:  5'- aCGAGCGAAACCUCGACGAGCGCAACCu -3'
miRNA:   3'- -GCUCGCUUUGGAGCUGCUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 35798 0.75 0.341399
Target:  5'- cCGAGCuguGCCUCGGCGccgucGGCGCGAUg -3'
miRNA:   3'- -GCUCGcuuUGGAGCUGC-----UCGCGUUGg -5'
12979 5' -53.1 NC_003387.1 + 2688 0.74 0.390924
Target:  5'- aCGAGCuuGACCUCGGCGAGguugugcucggcgaCGCGGgCg -3'
miRNA:   3'- -GCUCGcuUUGGAGCUGCUC--------------GCGUUgG- -5'
12979 5' -53.1 NC_003387.1 + 48290 0.66 0.856133
Target:  5'- cCGAcGCaGAGuucgccgcccGCCUCGACGAaaucgaggcggcGCGCGAgCg -3'
miRNA:   3'- -GCU-CG-CUU----------UGGAGCUGCU------------CGCGUUgG- -5'
12979 5' -53.1 NC_003387.1 + 51315 0.79 0.204459
Target:  5'- -cGGCGgcGCCUCGcacaacuuCGAGCGCGACCc -3'
miRNA:   3'- gcUCGCuuUGGAGCu-------GCUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 17210 0.78 0.221473
Target:  5'- cCGAGgcCGAGGCagauacaccgCUCGACGAGCGCAcGCCg -3'
miRNA:   3'- -GCUC--GCUUUG----------GAGCUGCUCGCGU-UGG- -5'
12979 5' -53.1 NC_003387.1 + 46931 0.77 0.255127
Target:  5'- uGAGcCGGGcACCgaggugucgauccgCGGCGAGCGCGGCCg -3'
miRNA:   3'- gCUC-GCUU-UGGa-------------GCUGCUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 10655 0.77 0.259115
Target:  5'- -cGGCGuucGGCCUCGACGcGGCuGCGACCa -3'
miRNA:   3'- gcUCGCu--UUGGAGCUGC-UCG-CGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 46985 0.77 0.27982
Target:  5'- gCGGGCGA--CgaCGACGAGCGCgGGCCg -3'
miRNA:   3'- -GCUCGCUuuGgaGCUGCUCGCG-UUGG- -5'
12979 5' -53.1 NC_003387.1 + 27168 0.76 0.32513
Target:  5'- --cGCGAAGcugcugccCCUCGgcgugugguggcGCGAGCGCAACCg -3'
miRNA:   3'- gcuCGCUUU--------GGAGC------------UGCUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 25931 0.77 0.287009
Target:  5'- -cAGCGcgGCCUCGuCGAGCGguGCUg -3'
miRNA:   3'- gcUCGCuuUGGAGCuGCUCGCguUGG- -5'
12979 5' -53.1 NC_003387.1 + 28198 0.77 0.272776
Target:  5'- aGGGCGGcGACCugcagcUCGGCaAGCGCAGCCg -3'
miRNA:   3'- gCUCGCU-UUGG------AGCUGcUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 21696 0.83 0.121115
Target:  5'- -uGGCc--GCCUCGGCGAGCGCGGCCc -3'
miRNA:   3'- gcUCGcuuUGGAGCUGCUCGCGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 39564 0.76 0.317214
Target:  5'- gCGAGCcuGACCUCGACGGccuguucgcgcuGCGC-ACCa -3'
miRNA:   3'- -GCUCGcuUUGGAGCUGCU------------CGCGuUGG- -5'
12979 5' -53.1 NC_003387.1 + 13304 0.82 0.124576
Target:  5'- aGGGCGGcGGCCUCGACG-GCaGCGACCu -3'
miRNA:   3'- gCUCGCU-UUGGAGCUGCuCG-CGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 28021 0.77 0.265874
Target:  5'- aCGAGCGcggcaagccGAuCCUCGGCGAGCuGaCGACCa -3'
miRNA:   3'- -GCUCGC---------UUuGGAGCUGCUCG-C-GUUGG- -5'
12979 5' -53.1 NC_003387.1 + 9348 0.76 0.317214
Target:  5'- uCGAGCaccaGGACgUCGACGAGCcggugGCGGCCg -3'
miRNA:   3'- -GCUCGc---UUUGgAGCUGCUCG-----CGUUGG- -5'
12979 5' -53.1 NC_003387.1 + 43027 0.74 0.383696
Target:  5'- cCGAGCGGugucgucAACCUCaaGACGGGCGagcuGACCc -3'
miRNA:   3'- -GCUCGCU-------UUGGAG--CUGCUCGCg---UUGG- -5'
12979 5' -53.1 NC_003387.1 + 39246 0.8 0.178135
Target:  5'- cCGGGCGAggccgucgaguucGACCUCGGCGAGCuggGCAAgCu -3'
miRNA:   3'- -GCUCGCU-------------UUGGAGCUGCUCG---CGUUgG- -5'
12979 5' -53.1 NC_003387.1 + 18192 0.78 0.246017
Target:  5'- uCGGcuGCGAGgugcGCCUCGGCGAcGCGaCGACCg -3'
miRNA:   3'- -GCU--CGCUU----UGGAGCUGCU-CGC-GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.