miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 3' -54.8 NC_003387.1 + 40510 0.66 0.751537
Target:  5'- gGGGCACgCCGGGaaugucgggaaCGGUGaacgucaucUUGUCGGCCa -3'
miRNA:   3'- -CUUGUGgGGCUC-----------GCCAC---------AGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 23327 0.66 0.751537
Target:  5'- -uGCGCCCggCGGGCGaGaucgagGUCGUCAccggcGCCg -3'
miRNA:   3'- cuUGUGGG--GCUCGC-Ca-----CAGCAGU-----UGG- -5'
12980 3' -54.8 NC_003387.1 + 9020 0.66 0.741152
Target:  5'- cGAGCACCUggCGGGCGccGUCGgCGAUCc -3'
miRNA:   3'- -CUUGUGGG--GCUCGCcaCAGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 4465 0.66 0.751537
Target:  5'- aGAACAgCCCGAGCuGcUGgccgCGgcCGACCg -3'
miRNA:   3'- -CUUGUgGGGCUCGcC-ACa---GCa-GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 45316 0.66 0.730658
Target:  5'- ---aACCuuGuGCGGUGUCGggaacaUCAGCa -3'
miRNA:   3'- cuugUGGggCuCGCCACAGC------AGUUGg -5'
12980 3' -54.8 NC_003387.1 + 47066 0.67 0.666026
Target:  5'- --uUACCCCGAGCGGauUCG-CAcgguucACCg -3'
miRNA:   3'- cuuGUGGGGCUCGCCacAGCaGU------UGG- -5'
12980 3' -54.8 NC_003387.1 + 29485 0.67 0.666026
Target:  5'- aGGGCacgGCCCgCGAGaUGGg--CGUCGACCg -3'
miRNA:   3'- -CUUG---UGGG-GCUC-GCCacaGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 37917 0.67 0.709386
Target:  5'- -cGCGCCgUGGGuCGGUGUCGaccaUCAugUa -3'
miRNA:   3'- cuUGUGGgGCUC-GCCACAGC----AGUugG- -5'
12980 3' -54.8 NC_003387.1 + 12713 0.67 0.687812
Target:  5'- cGAGCGCCCgCGGGgcucuaGGUGcCGUCGuagaACUg -3'
miRNA:   3'- -CUUGUGGG-GCUCg-----CCACaGCAGU----UGG- -5'
12980 3' -54.8 NC_003387.1 + 36648 0.67 0.67694
Target:  5'- cGGCGcCCCCGAGUGGcaucaccgGcUCGcCGACCu -3'
miRNA:   3'- cUUGU-GGGGCUCGCCa-------C-AGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 30411 0.67 0.666026
Target:  5'- uGGCugCCCGAGC--UGUCGggugaAACCg -3'
miRNA:   3'- cUUGugGGGCUCGccACAGCag---UUGG- -5'
12980 3' -54.8 NC_003387.1 + 35501 0.67 0.67694
Target:  5'- -uGCGCUcgUCGAGCGGUGUaucugccUCGGCCu -3'
miRNA:   3'- cuUGUGG--GGCUCGCCACAgc-----AGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 17005 0.67 0.698631
Target:  5'- ---gACCCCGAGCGGg--CGcUAAUCa -3'
miRNA:   3'- cuugUGGGGCUCGCCacaGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 51459 0.67 0.698631
Target:  5'- uGAACACCUCGc-CGGgGUCcGUCGGCUu -3'
miRNA:   3'- -CUUGUGGGGCucGCCaCAG-CAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 51040 0.67 0.698631
Target:  5'- ---gACCgCCGccGCGGUGUCGguacCGGCCc -3'
miRNA:   3'- cuugUGG-GGCu-CGCCACAGCa---GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 36657 0.67 0.697552
Target:  5'- cGAuCugCCCGAcgaccucGCGGaucaUGUCGUC-GCCa -3'
miRNA:   3'- -CUuGugGGGCU-------CGCC----ACAGCAGuUGG- -5'
12980 3' -54.8 NC_003387.1 + 52251 0.67 0.67694
Target:  5'- cGAGCAgCUCGcGcCGGUcGcCGUCGGCCg -3'
miRNA:   3'- -CUUGUgGGGCuC-GCCA-CaGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 15833 0.67 0.666025
Target:  5'- uGugACgCCGAcGCGGUGccCGUCGGCg -3'
miRNA:   3'- cUugUGgGGCU-CGCCACa-GCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 51354 0.67 0.666025
Target:  5'- -uGCGCCacugCGAGCGGUcGUCGgggUCGGCg -3'
miRNA:   3'- cuUGUGGg---GCUCGCCA-CAGC---AGUUGg -5'
12980 3' -54.8 NC_003387.1 + 2332 0.67 0.67694
Target:  5'- -uACAgCUCG-GCGGUGUCGa-GGCCg -3'
miRNA:   3'- cuUGUgGGGCuCGCCACAGCagUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.