miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 3' -54.8 NC_003387.1 + 6627 0.66 0.726432
Target:  5'- gGAACAUgUCG-GCGGccgucuugggcucGUCGUCGACCc -3'
miRNA:   3'- -CUUGUGgGGCuCGCCa------------CAGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 22038 0.66 0.720066
Target:  5'- cGACAUUCCGugGGCGGUGgCGgCGAUCa -3'
miRNA:   3'- cUUGUGGGGC--UCGCCACaGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 50397 0.66 0.720066
Target:  5'- cGACACCgCCGAGCuGUacGUCGggCGGCa -3'
miRNA:   3'- cUUGUGG-GGCUCGcCA--CAGCa-GUUGg -5'
12980 3' -54.8 NC_003387.1 + 33665 0.66 0.720066
Target:  5'- cGugGCCCUG-GCGGcGaUgGUCGACCu -3'
miRNA:   3'- cUugUGGGGCuCGCCaC-AgCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 18142 0.66 0.719002
Target:  5'- cGGGCACCUCaaGGCGGUuggcaucgaguucGaCGUCGACCc -3'
miRNA:   3'- -CUUGUGGGGc-UCGCCA-------------CaGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 45066 0.67 0.709386
Target:  5'- cGAGCGCgucgagggccguCCUGGGcCGGUGuUCGgCGGCCa -3'
miRNA:   3'- -CUUGUG------------GGGCUC-GCCAC-AGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 37917 0.67 0.709386
Target:  5'- -cGCGCCgUGGGuCGGUGUCGaccaUCAugUa -3'
miRNA:   3'- cuUGUGGgGCUC-GCCACAGC----AGUugG- -5'
12980 3' -54.8 NC_003387.1 + 34966 0.67 0.709386
Target:  5'- cGACGCCgugaUGAGCGGUGUgGccccuggCGGCCc -3'
miRNA:   3'- cUUGUGGg---GCUCGCCACAgCa------GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 48045 0.67 0.709386
Target:  5'- cAGCACCUCGucuugcuuGGCGG---CGUCGGCCg -3'
miRNA:   3'- cUUGUGGGGC--------UCGCCacaGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 2208 0.67 0.708314
Target:  5'- gGggUGCCUCGugcucgccggucaGGCGGccagCGUCAGCCa -3'
miRNA:   3'- -CuuGUGGGGC-------------UCGCCaca-GCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 51459 0.67 0.698631
Target:  5'- uGAACACCUCGc-CGGgGUCcGUCGGCUu -3'
miRNA:   3'- -CUUGUGGGGCucGCCaCAG-CAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 17005 0.67 0.698631
Target:  5'- ---gACCCCGAGCGGg--CGcUAAUCa -3'
miRNA:   3'- cuugUGGGGCUCGCCacaGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 51040 0.67 0.698631
Target:  5'- ---gACCgCCGccGCGGUGUCGguacCGGCCc -3'
miRNA:   3'- cuugUGG-GGCu-CGCCACAGCa---GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 36657 0.67 0.697552
Target:  5'- cGAuCugCCCGAcgaccucGCGGaucaUGUCGUC-GCCa -3'
miRNA:   3'- -CUuGugGGGCU-------CGCC----ACAGCAGuUGG- -5'
12980 3' -54.8 NC_003387.1 + 12713 0.67 0.687812
Target:  5'- cGAGCGCCCgCGGGgcucuaGGUGcCGUCGuagaACUg -3'
miRNA:   3'- -CUUGUGGG-GCUCg-----CCACaGCAGU----UGG- -5'
12980 3' -54.8 NC_003387.1 + 36648 0.67 0.67694
Target:  5'- cGGCGcCCCCGAGUGGcaucaccgGcUCGcCGACCu -3'
miRNA:   3'- cUUGU-GGGGCUCGCCa-------C-AGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 2332 0.67 0.67694
Target:  5'- -uACAgCUCG-GCGGUGUCGa-GGCCg -3'
miRNA:   3'- cuUGUgGGGCuCGCCACAGCagUUGG- -5'
12980 3' -54.8 NC_003387.1 + 52251 0.67 0.67694
Target:  5'- cGAGCAgCUCGcGcCGGUcGcCGUCGGCCg -3'
miRNA:   3'- -CUUGUgGGGCuC-GCCA-CaGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 35501 0.67 0.67694
Target:  5'- -uGCGCUcgUCGAGCGGUGUaucugccUCGGCCu -3'
miRNA:   3'- cuUGUGG--GGCUCGCCACAgc-----AGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 24876 0.67 0.666026
Target:  5'- ---gACCUCGGGCGGUGgcugcgcccUGUCcACCg -3'
miRNA:   3'- cuugUGGGGCUCGCCACa--------GCAGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.