miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 5' -63.2 NC_003387.1 + 22950 0.68 0.238086
Target:  5'- gCGcAGCUGACCgCGUggGgCGCCCCGGu- -3'
miRNA:   3'- -GC-UCGACUGGgGCG--UgGCGGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 23505 0.67 0.309753
Target:  5'- gGuGCccGGCCaaCCGCGCCGaCCCCGAa- -3'
miRNA:   3'- gCuCGa-CUGG--GGCGUGGC-GGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 23822 0.66 0.355304
Target:  5'- uCGGGCggUGGCCCgGCgcccgcgccuaaGCCGCCgcagUCGGGGc -3'
miRNA:   3'- -GCUCG--ACUGGGgCG------------UGGCGG----GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 23888 0.71 0.171827
Target:  5'- -uGGCUGGCCgacgUGCugCGCgCCGAGGg -3'
miRNA:   3'- gcUCGACUGGg---GCGugGCGgGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 24404 0.66 0.355304
Target:  5'- -aGGCUGAUCUgcaCGC-CCGCgauaCCGAGGg -3'
miRNA:   3'- gcUCGACUGGG---GCGuGGCGg---GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 24629 0.67 0.309033
Target:  5'- uGGGC-GACCCgaCGCACCucGCCCugcugcgCGAGGu -3'
miRNA:   3'- gCUCGaCUGGG--GCGUGG--CGGG-------GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 24781 0.72 0.129157
Target:  5'- cCGAGCgccccGACCgaGC-CCGcCCCCGAGGc -3'
miRNA:   3'- -GCUCGa----CUGGggCGuGGC-GGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 25179 0.72 0.129157
Target:  5'- gCGcGgUGGCCCCgGCGCCGCCgCCGcGGc -3'
miRNA:   3'- -GCuCgACUGGGG-CGUGGCGG-GGCuCC- -5'
12980 5' -63.2 NC_003387.1 + 25944 0.68 0.266861
Target:  5'- uCGAGCgGugCUgGCGCUGCUcgcuaacccguucgCCGAGGu -3'
miRNA:   3'- -GCUCGaCugGGgCGUGGCGG--------------GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 26144 0.72 0.132591
Target:  5'- aCGAGCcagcauGCCCgGCACCGCCCgCaAGGg -3'
miRNA:   3'- -GCUCGac----UGGGgCGUGGCGGG-GcUCC- -5'
12980 5' -63.2 NC_003387.1 + 26779 0.67 0.281938
Target:  5'- gCGAGCa-GCgCCaGCACCGCCUcgaCGAGGc -3'
miRNA:   3'- -GCUCGacUGgGG-CGUGGCGGG---GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 26893 0.72 0.125474
Target:  5'- cCGAGCaGGCCaCCGCccagGCCGCCgagcaggccgccaCCGAGGc -3'
miRNA:   3'- -GCUCGaCUGG-GGCG----UGGCGG-------------GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 27135 0.66 0.36253
Target:  5'- uCGAgGCcGugCCCGCcggggucGgCGCCgCCGGGGa -3'
miRNA:   3'- -GCU-CGaCugGGGCG-------UgGCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 27497 0.69 0.21784
Target:  5'- uCGAGCggcuguggcgcgaaGAUCCgGcCGCCGCCgCGAGGu -3'
miRNA:   3'- -GCUCGa-------------CUGGGgC-GUGGCGGgGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 27884 0.66 0.355304
Target:  5'- uCGAGCagGAgCCCGgccaGCCGC-CCGAGu -3'
miRNA:   3'- -GCUCGa-CUgGGGCg---UGGCGgGGCUCc -5'
12980 5' -63.2 NC_003387.1 + 27917 0.66 0.36253
Target:  5'- cCGAGCUG-CUgCGCcaggucgGCCGCgaCCCGAGcGg -3'
miRNA:   3'- -GCUCGACuGGgGCG-------UGGCG--GGGCUC-C- -5'
12980 5' -63.2 NC_003387.1 + 28024 0.66 0.363339
Target:  5'- gCGAGCuUGGCgUCGUACUGCCggUCGGGa -3'
miRNA:   3'- -GCUCG-ACUGgGGCGUGGCGG--GGCUCc -5'
12980 5' -63.2 NC_003387.1 + 28459 0.67 0.295591
Target:  5'- aCGAGCUGGCg--GCGgC-CCCCGAGGu -3'
miRNA:   3'- -GCUCGACUGgggCGUgGcGGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 29420 0.67 0.309753
Target:  5'- gGAGgaGGCCgCCGCAgCGgCCCGcgcGGu -3'
miRNA:   3'- gCUCgaCUGG-GGCGUgGCgGGGCu--CC- -5'
12980 5' -63.2 NC_003387.1 + 29956 0.68 0.26879
Target:  5'- --uGCcGACCUCGCGCCGUuuCgCGAGGu -3'
miRNA:   3'- gcuCGaCUGGGGCGUGGCG--GgGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.