miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 5' -63.2 NC_003387.1 + 33428 0.66 0.339611
Target:  5'- cCGAGCUGGa-UCGgGCUG-CCCGAGGc -3'
miRNA:   3'- -GCUCGACUggGGCgUGGCgGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 31090 0.66 0.331955
Target:  5'- aCGAGCUGACgCUCGaCGCCuG-CCCGAu- -3'
miRNA:   3'- -GCUCGACUG-GGGC-GUGG-CgGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 44417 0.66 0.331955
Target:  5'- uGAcGCUGugCUCGCgauGCUGCCCgccgacgcgcaCGAGGc -3'
miRNA:   3'- gCU-CGACugGGGCG---UGGCGGG-----------GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 37176 0.66 0.331955
Target:  5'- cCGAGCUGgcgGCCCgGCA---CCCCGAGc -3'
miRNA:   3'- -GCUCGAC---UGGGgCGUggcGGGGCUCc -5'
12980 5' -63.2 NC_003387.1 + 49202 0.66 0.324427
Target:  5'- aCGuuGCUGAgCCCGCAacggauCUGCCggUCGAGGc -3'
miRNA:   3'- -GCu-CGACUgGGGCGU------GGCGG--GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 15814 0.67 0.317026
Target:  5'- uGGGCUGACg-CGCACagCGUCaCCGAGGc -3'
miRNA:   3'- gCUCGACUGggGCGUG--GCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 32722 0.67 0.317026
Target:  5'- uGAGgUcgaacGGCgCCGCggagaACgGCCCCGAGGg -3'
miRNA:   3'- gCUCgA-----CUGgGGCG-----UGgCGGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 50521 0.67 0.317026
Target:  5'- gCGAGCacgaggcaccccUGAgCCCGCGgUGgCUCGGGGg -3'
miRNA:   3'- -GCUCG------------ACUgGGGCGUgGCgGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 37609 0.67 0.309753
Target:  5'- gGuGCa---CCCGCACCGCacugCCGAGGu -3'
miRNA:   3'- gCuCGacugGGGCGUGGCGg---GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 23505 0.67 0.309753
Target:  5'- gGuGCccGGCCaaCCGCGCCGaCCCCGAa- -3'
miRNA:   3'- gCuCGa-CUGG--GGCGUGGC-GGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 29420 0.67 0.309753
Target:  5'- gGAGgaGGCCgCCGCAgCGgCCCGcgcGGu -3'
miRNA:   3'- gCUCgaCUGG-GGCGUgGCgGGGCu--CC- -5'
12980 5' -63.2 NC_003387.1 + 24629 0.67 0.309033
Target:  5'- uGGGC-GACCCgaCGCACCucGCCCugcugcgCGAGGu -3'
miRNA:   3'- gCUCGaCUGGG--GCGUGG--CGGG-------GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 34309 0.67 0.302609
Target:  5'- cCGAGC--AgCCCGCGCUGCCCgCGGc- -3'
miRNA:   3'- -GCUCGacUgGGGCGUGGCGGG-GCUcc -5'
12980 5' -63.2 NC_003387.1 + 17084 0.67 0.302608
Target:  5'- -cGGCcaGugCCCGCccgGCCGCCUCGGcGGg -3'
miRNA:   3'- gcUCGa-CugGGGCG---UGGCGGGGCU-CC- -5'
12980 5' -63.2 NC_003387.1 + 44629 0.67 0.301901
Target:  5'- gCGAGCgugUGGCCCUGgcCGCgGCCucggcgauccuggCCGAGGg -3'
miRNA:   3'- -GCUCG---ACUGGGGC--GUGgCGG-------------GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 28459 0.67 0.295591
Target:  5'- aCGAGCUGGCg--GCGgC-CCCCGAGGu -3'
miRNA:   3'- -GCUCGACUGgggCGUgGcGGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 21573 0.67 0.295591
Target:  5'- cCGAGCUGAUCCUGCACga-CUCGAu- -3'
miRNA:   3'- -GCUCGACUGGGGCGUGgcgGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 1401 0.67 0.281938
Target:  5'- cCGAGCUa--CCCGCACCGgacgucggCCCGAGc -3'
miRNA:   3'- -GCUCGAcugGGGCGUGGCg-------GGGCUCc -5'
12980 5' -63.2 NC_003387.1 + 26779 0.67 0.281938
Target:  5'- gCGAGCa-GCgCCaGCACCGCCUcgaCGAGGc -3'
miRNA:   3'- -GCUCGacUGgGG-CGUGGCGGG---GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 4463 0.68 0.275301
Target:  5'- cCGAGCcGACCgCCGagcCCGCCgCGAaGGc -3'
miRNA:   3'- -GCUCGaCUGG-GGCgu-GGCGGgGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.