Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12981 | 3' | -56.4 | NC_003387.1 | + | 36525 | 0.66 | 0.673899 |
Target: 5'- aGUGCUCGgccGuGAUgaucgacgaGUGCUCGGUgucGCGGa -3' miRNA: 3'- gCACGAGUa--C-CUG---------CACGAGUCG---CGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 17175 | 0.66 | 0.663052 |
Target: 5'- gGUGCgccgCcUGGGCG-GCgaCGGCGCGa -3' miRNA: 3'- gCACGa---GuACCUGCaCGa-GUCGCGCc -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 19453 | 0.66 | 0.652176 |
Target: 5'- cCGUGCg---GGcGCGUG-UCAGUGUGGg -3' miRNA: 3'- -GCACGaguaCC-UGCACgAGUCGCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 44023 | 0.66 | 0.641282 |
Target: 5'- gCG-GCUCGUcGACGUcGgUCGGCaGCGGc -3' miRNA: 3'- -GCaCGAGUAcCUGCA-CgAGUCG-CGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 31024 | 0.66 | 0.641282 |
Target: 5'- gCGUGCgCcgGGGCGgcgGC-CAGCaCGGc -3' miRNA: 3'- -GCACGaGuaCCUGCa--CGaGUCGcGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 4165 | 0.66 | 0.63038 |
Target: 5'- uCGaUGCacgCcUGGcACGUGacCUCGGCGCGGu -3' miRNA: 3'- -GC-ACGa--GuACC-UGCAC--GAGUCGCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 42453 | 0.67 | 0.615122 |
Target: 5'- gGUGUcgaacUUcgGGGCGaccuugagcccgcGCUCGGCGCGGc -3' miRNA: 3'- gCACG-----AGuaCCUGCa------------CGAGUCGCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 10102 | 0.67 | 0.60859 |
Target: 5'- --aGUUCAUGGcaauGCGcGCUgAGCGCGa -3' miRNA: 3'- gcaCGAGUACC----UGCaCGAgUCGCGCc -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 25823 | 0.67 | 0.586879 |
Target: 5'- -cUGCUCGgcggccUGGGCGguggccUGCUCGGUgGCGGc -3' miRNA: 3'- gcACGAGU------ACCUGC------ACGAGUCG-CGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 38922 | 0.67 | 0.586879 |
Target: 5'- -uUGCUCgcuGUGGAUcUGCgagcgCAGCGCGa -3' miRNA: 3'- gcACGAG---UACCUGcACGa----GUCGCGCc -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 25150 | 0.68 | 0.554611 |
Target: 5'- --aGCUgacUAUGcGACGcagguucgGCUCGGCGCGGu -3' miRNA: 3'- gcaCGA---GUAC-CUGCa-------CGAGUCGCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 11113 | 0.68 | 0.554611 |
Target: 5'- cCGgGCUUAUGGGCGUGUUCGacaagcugaccGcCGCGa -3' miRNA: 3'- -GCaCGAGUACCUGCACGAGU-----------C-GCGCc -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 1140 | 0.68 | 0.554611 |
Target: 5'- uGUGCUCGgcgccuGCGUGCau-GCGCGGu -3' miRNA: 3'- gCACGAGUacc---UGCACGaguCGCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 3412 | 0.68 | 0.533389 |
Target: 5'- -aUGCUCggGGcCGUGCccUCGGCGUGc -3' miRNA: 3'- gcACGAGuaCCuGCACG--AGUCGCGCc -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 21202 | 0.68 | 0.533389 |
Target: 5'- cCGUGCUggccgCGUGGaacaGCGUGCg-GGCGCaGGg -3' miRNA: 3'- -GCACGA-----GUACC----UGCACGagUCGCG-CC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 37326 | 0.68 | 0.522886 |
Target: 5'- aCGUGC-CGUGGACGaGCcccCGcCGCGGg -3' miRNA: 3'- -GCACGaGUACCUGCaCGa--GUcGCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 28777 | 0.68 | 0.512463 |
Target: 5'- aCGUGCUgcagCAUGGGCacugGCacaccgCGGCGUGGg -3' miRNA: 3'- -GCACGA----GUACCUGca--CGa-----GUCGCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 38501 | 0.69 | 0.451932 |
Target: 5'- gCG-GC-CGUGGGCGUGCg-AGgGCGGc -3' miRNA: 3'- -GCaCGaGUACCUGCACGagUCgCGCC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 22676 | 0.69 | 0.451932 |
Target: 5'- gCGcGCUCGUGGGCgGUGUcgacggCGGCGCuGGc -3' miRNA: 3'- -GCaCGAGUACCUG-CACGa-----GUCGCG-CC- -5' |
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12981 | 3' | -56.4 | NC_003387.1 | + | 21912 | 0.7 | 0.432632 |
Target: 5'- gGUGCcgcuUCAUcgacauuGugGUGCUCGGCgGCGGg -3' miRNA: 3'- gCACG----AGUAc------CugCACGAGUCG-CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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