miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12981 3' -56.4 NC_003387.1 + 43280 1.1 0.000678
Target:  5'- gCGUGCUCAUGGACGUGCUCAGCGCGGu -3'
miRNA:   3'- -GCACGAGUACCUGCACGAGUCGCGCC- -5'
12981 3' -56.4 NC_003387.1 + 42734 0.74 0.23069
Target:  5'- -cUGCUCGUcaGGGCGUGCUCGGauCGGc -3'
miRNA:   3'- gcACGAGUA--CCUGCACGAGUCgcGCC- -5'
12981 3' -56.4 NC_003387.1 + 37759 0.73 0.262251
Target:  5'- -cUGCUCGgcgaccucaaGGGCGUGCUCAaGCGCGc -3'
miRNA:   3'- gcACGAGUa---------CCUGCACGAGU-CGCGCc -5'
12981 3' -56.4 NC_003387.1 + 26254 0.72 0.304653
Target:  5'- cCGUGCUgauggucagCAUGGGCGUGCUCGacCGCa- -3'
miRNA:   3'- -GCACGA---------GUACCUGCACGAGUc-GCGcc -5'
12981 3' -56.4 NC_003387.1 + 21074 0.71 0.360529
Target:  5'- uCGUGCUCuUGGGCaUGCUgacgcgcuuagcCAGgGCGGu -3'
miRNA:   3'- -GCACGAGuACCUGcACGA------------GUCgCGCC- -5'
12981 3' -56.4 NC_003387.1 + 35851 0.71 0.360529
Target:  5'- uCGUGCaUCGccUGGGCGUGCggCGccaucuccucGCGCGGc -3'
miRNA:   3'- -GCACG-AGU--ACCUGCACGa-GU----------CGCGCC- -5'
12981 3' -56.4 NC_003387.1 + 21912 0.7 0.432632
Target:  5'- gGUGCcgcuUCAUcgacauuGugGUGCUCGGCgGCGGg -3'
miRNA:   3'- gCACG----AGUAc------CugCACGAGUCG-CGCC- -5'
12981 3' -56.4 NC_003387.1 + 22676 0.69 0.451932
Target:  5'- gCGcGCUCGUGGGCgGUGUcgacggCGGCGCuGGc -3'
miRNA:   3'- -GCaCGAGUACCUG-CACGa-----GUCGCG-CC- -5'
12981 3' -56.4 NC_003387.1 + 38501 0.69 0.451932
Target:  5'- gCG-GC-CGUGGGCGUGCg-AGgGCGGc -3'
miRNA:   3'- -GCaCGaGUACCUGCACGagUCgCGCC- -5'
12981 3' -56.4 NC_003387.1 + 28777 0.68 0.512463
Target:  5'- aCGUGCUgcagCAUGGGCacugGCacaccgCGGCGUGGg -3'
miRNA:   3'- -GCACGA----GUACCUGca--CGa-----GUCGCGCC- -5'
12981 3' -56.4 NC_003387.1 + 37326 0.68 0.522886
Target:  5'- aCGUGC-CGUGGACGaGCcccCGcCGCGGg -3'
miRNA:   3'- -GCACGaGUACCUGCaCGa--GUcGCGCC- -5'
12981 3' -56.4 NC_003387.1 + 3412 0.68 0.533389
Target:  5'- -aUGCUCggGGcCGUGCccUCGGCGUGc -3'
miRNA:   3'- gcACGAGuaCCuGCACG--AGUCGCGCc -5'
12981 3' -56.4 NC_003387.1 + 21202 0.68 0.533389
Target:  5'- cCGUGCUggccgCGUGGaacaGCGUGCg-GGCGCaGGg -3'
miRNA:   3'- -GCACGA-----GUACC----UGCACGagUCGCG-CC- -5'
12981 3' -56.4 NC_003387.1 + 11113 0.68 0.554611
Target:  5'- cCGgGCUUAUGGGCGUGUUCGacaagcugaccGcCGCGa -3'
miRNA:   3'- -GCaCGAGUACCUGCACGAGU-----------C-GCGCc -5'
12981 3' -56.4 NC_003387.1 + 25150 0.68 0.554611
Target:  5'- --aGCUgacUAUGcGACGcagguucgGCUCGGCGCGGu -3'
miRNA:   3'- gcaCGA---GUAC-CUGCa-------CGAGUCGCGCC- -5'
12981 3' -56.4 NC_003387.1 + 1140 0.68 0.554611
Target:  5'- uGUGCUCGgcgccuGCGUGCau-GCGCGGu -3'
miRNA:   3'- gCACGAGUacc---UGCACGaguCGCGCC- -5'
12981 3' -56.4 NC_003387.1 + 38922 0.67 0.586879
Target:  5'- -uUGCUCgcuGUGGAUcUGCgagcgCAGCGCGa -3'
miRNA:   3'- gcACGAG---UACCUGcACGa----GUCGCGCc -5'
12981 3' -56.4 NC_003387.1 + 25823 0.67 0.586879
Target:  5'- -cUGCUCGgcggccUGGGCGguggccUGCUCGGUgGCGGc -3'
miRNA:   3'- gcACGAGU------ACCUGC------ACGAGUCG-CGCC- -5'
12981 3' -56.4 NC_003387.1 + 10102 0.67 0.60859
Target:  5'- --aGUUCAUGGcaauGCGcGCUgAGCGCGa -3'
miRNA:   3'- gcaCGAGUACC----UGCaCGAgUCGCGCc -5'
12981 3' -56.4 NC_003387.1 + 42453 0.67 0.615122
Target:  5'- gGUGUcgaacUUcgGGGCGaccuugagcccgcGCUCGGCGCGGc -3'
miRNA:   3'- gCACG-----AGuaCCUGCa------------CGAGUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.