miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12981 5' -58 NC_003387.1 + 45725 0.66 0.53639
Target:  5'- uGCUGCGCGAcauUCuGCGGCGCCu-GCAc -3'
miRNA:   3'- cUGAUGCGCU---AG-UGUCGCGGccCGUu -5'
12981 5' -58 NC_003387.1 + 44967 0.66 0.53639
Target:  5'- cGGCUcaggcCGCGAUCGCcgcuGcCGCCGaGGCGGu -3'
miRNA:   3'- -CUGAu----GCGCUAGUGu---C-GCGGC-CCGUU- -5'
12981 5' -58 NC_003387.1 + 28792 0.66 0.536389
Target:  5'- ----cCGCGGUCG-AGCcaGCCGGGCAGc -3'
miRNA:   3'- cugauGCGCUAGUgUCG--CGGCCCGUU- -5'
12981 5' -58 NC_003387.1 + 3839 0.66 0.524693
Target:  5'- gGGCgGCGCGGUagGCGGCGCCGacgauccGGCu- -3'
miRNA:   3'- -CUGaUGCGCUAg-UGUCGCGGC-------CCGuu -5'
12981 5' -58 NC_003387.1 + 4523 0.66 0.515197
Target:  5'- uGCUGCGCGAagcgaaCGCAGCaauggaaaCGGGCGAc -3'
miRNA:   3'- cUGAUGCGCUa-----GUGUCGcg------GCCCGUU- -5'
12981 5' -58 NC_003387.1 + 18397 0.66 0.515197
Target:  5'- cGGCUGCGacgGGUCggccgcggGCAGCGCgggcugcuCGGGCAGc -3'
miRNA:   3'- -CUGAUGCg--CUAG--------UGUCGCG--------GCCCGUU- -5'
12981 5' -58 NC_003387.1 + 23825 0.66 0.494351
Target:  5'- --aUACGUGAgggCGCcGCGCCGGGa-- -3'
miRNA:   3'- cugAUGCGCUa--GUGuCGCGGCCCguu -5'
12981 5' -58 NC_003387.1 + 14923 0.66 0.494351
Target:  5'- cGGCUGCGCGGcUAcCGGCGCagCGGcGCAu -3'
miRNA:   3'- -CUGAUGCGCUaGU-GUCGCG--GCC-CGUu -5'
12981 5' -58 NC_003387.1 + 42202 0.66 0.484073
Target:  5'- gGGCgUGCGCGAgcaggACGGCGaCCGGcGCAc -3'
miRNA:   3'- -CUG-AUGCGCUag---UGUCGC-GGCC-CGUu -5'
12981 5' -58 NC_003387.1 + 19325 0.67 0.473899
Target:  5'- cGAgUACaGCGAcgagCGCGGCgagaaccugGCCGGGCGGg -3'
miRNA:   3'- -CUgAUG-CGCUa---GUGUCG---------CGGCCCGUU- -5'
12981 5' -58 NC_003387.1 + 22362 0.67 0.473899
Target:  5'- aGCUGCagGCGGUCGacucgugaaugUGGcCGCCGGGCAc -3'
miRNA:   3'- cUGAUG--CGCUAGU-----------GUC-GCGGCCCGUu -5'
12981 5' -58 NC_003387.1 + 20195 0.67 0.473899
Target:  5'- uGCUGCGCc-UCGCAcgGCCGGGCGu -3'
miRNA:   3'- cUGAUGCGcuAGUGUcgCGGCCCGUu -5'
12981 5' -58 NC_003387.1 + 20989 0.67 0.467846
Target:  5'- aAUgcCGCGAUagcucucgucggcgACAGCGCCGGGCu- -3'
miRNA:   3'- cUGauGCGCUAg-------------UGUCGCGGCCCGuu -5'
12981 5' -58 NC_003387.1 + 2261 0.67 0.463833
Target:  5'- gGGCUGCGUGggCGCcccgaGGUGCCcgaGGGCGc -3'
miRNA:   3'- -CUGAUGCGCuaGUG-----UCGCGG---CCCGUu -5'
12981 5' -58 NC_003387.1 + 30346 0.67 0.453879
Target:  5'- uGAUagGCGCGGaaccaCACuGCGCCGGGUg- -3'
miRNA:   3'- -CUGa-UGCGCUa----GUGuCGCGGCCCGuu -5'
12981 5' -58 NC_003387.1 + 19642 0.67 0.444043
Target:  5'- gGGCgACGCGGuuacgcUCGCGGCGCUuGGCGc -3'
miRNA:   3'- -CUGaUGCGCU------AGUGUCGCGGcCCGUu -5'
12981 5' -58 NC_003387.1 + 19535 0.67 0.444043
Target:  5'- cGCUGCGCGAUcCGCAuGCGgC-GGCGAu -3'
miRNA:   3'- cUGAUGCGCUA-GUGU-CGCgGcCCGUU- -5'
12981 5' -58 NC_003387.1 + 25172 0.67 0.443067
Target:  5'- cGGCUcgGCGCGGUgGCcccGGCGCCGccgccgcGGCAGc -3'
miRNA:   3'- -CUGA--UGCGCUAgUG---UCGCGGC-------CCGUU- -5'
12981 5' -58 NC_003387.1 + 7753 0.67 0.434328
Target:  5'- cGGCaGCgGCGAUCGCGGCcugaGCCGcGGCc- -3'
miRNA:   3'- -CUGaUG-CGCUAGUGUCG----CGGC-CCGuu -5'
12981 5' -58 NC_003387.1 + 29450 0.68 0.415274
Target:  5'- cGCUAuccuCGCGAUCgagaACGGCGCCagcgagcaGGGCAc -3'
miRNA:   3'- cUGAU----GCGCUAG----UGUCGCGG--------CCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.