miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12981 5' -58 NC_003387.1 + 49334 0.68 0.415274
Target:  5'- uGAUcGCGCGcaagCugAGCGUCGGGUAc -3'
miRNA:   3'- -CUGaUGCGCua--GugUCGCGGCCCGUu -5'
12981 5' -58 NC_003387.1 + 23728 0.68 0.405942
Target:  5'- cGACUcggcgcAgGCGAUC-CAGCgGUCGGGCGu -3'
miRNA:   3'- -CUGA------UgCGCUAGuGUCG-CGGCCCGUu -5'
12981 5' -58 NC_003387.1 + 2376 0.68 0.396741
Target:  5'- --gUACGCGGUCACGuUGCCgcGGGCGg -3'
miRNA:   3'- cugAUGCGCUAGUGUcGCGG--CCCGUu -5'
12981 5' -58 NC_003387.1 + 31265 0.68 0.387677
Target:  5'- gGGCUGCGCca--GCGGgGCCGGGUu- -3'
miRNA:   3'- -CUGAUGCGcuagUGUCgCGGCCCGuu -5'
12981 5' -58 NC_003387.1 + 45874 0.68 0.37875
Target:  5'- cGGCUGCGCGc-CGCGGcCGagCGGGCGAu -3'
miRNA:   3'- -CUGAUGCGCuaGUGUC-GCg-GCCCGUU- -5'
12981 5' -58 NC_003387.1 + 39232 0.68 0.37875
Target:  5'- -----aGCGggUAcCGGCGCCGGGCGAg -3'
miRNA:   3'- cugaugCGCuaGU-GUCGCGGCCCGUU- -5'
12981 5' -58 NC_003387.1 + 15261 0.68 0.377865
Target:  5'- -uUUugGCGG-CGCAGCGCCGccagcauGGCAAc -3'
miRNA:   3'- cuGAugCGCUaGUGUCGCGGC-------CCGUU- -5'
12981 5' -58 NC_003387.1 + 37352 0.68 0.369962
Target:  5'- gGGCUGCGCuAUCuGCGGCaccuGUCGGGCGg -3'
miRNA:   3'- -CUGAUGCGcUAG-UGUCG----CGGCCCGUu -5'
12981 5' -58 NC_003387.1 + 48058 0.69 0.352808
Target:  5'- uGCUugGCGGcgucggcCGCuuGGCGCCGGGCc- -3'
miRNA:   3'- cUGAugCGCUa------GUG--UCGCGGCCCGuu -5'
12981 5' -58 NC_003387.1 + 15873 0.69 0.352808
Target:  5'- uGCUGCuugaggGCGGUCACAGCGCCGccGCc- -3'
miRNA:   3'- cUGAUG------CGCUAGUGUCGCGGCc-CGuu -5'
12981 5' -58 NC_003387.1 + 26565 0.69 0.336225
Target:  5'- uGACgcccuUGCGG--GCGGUGCCGGGCAu -3'
miRNA:   3'- -CUGau---GCGCUagUGUCGCGGCCCGUu -5'
12981 5' -58 NC_003387.1 + 6933 0.69 0.336225
Target:  5'- cGGCcaucauCGCGGccugCGCAGCGgCGGGCAGg -3'
miRNA:   3'- -CUGau----GCGCUa---GUGUCGCgGCCCGUU- -5'
12981 5' -58 NC_003387.1 + 18695 0.69 0.328149
Target:  5'- cGACcagGUGCGGgucgCGCAGCGCCaGGGCGc -3'
miRNA:   3'- -CUGa--UGCGCUa---GUGUCGCGG-CCCGUu -5'
12981 5' -58 NC_003387.1 + 50241 0.7 0.320217
Target:  5'- uACgagGCGCcGUaCGuCAGCGCCGGGCGGu -3'
miRNA:   3'- cUGa--UGCGcUA-GU-GUCGCGGCCCGUU- -5'
12981 5' -58 NC_003387.1 + 28868 0.7 0.320217
Target:  5'- gGACUGguacCGCGAgcggCACGGCGCCGagucccGGCGc -3'
miRNA:   3'- -CUGAU----GCGCUa---GUGUCGCGGC------CCGUu -5'
12981 5' -58 NC_003387.1 + 43115 0.7 0.31243
Target:  5'- ---aGCGCGAcggCGCGGCGCCGcGGUg- -3'
miRNA:   3'- cugaUGCGCUa--GUGUCGCGGC-CCGuu -5'
12981 5' -58 NC_003387.1 + 41373 0.7 0.29729
Target:  5'- cGACgccgaGCGUGAg-GCcgAGCGCCGGGCGAc -3'
miRNA:   3'- -CUGa----UGCGCUagUG--UCGCGGCCCGUU- -5'
12981 5' -58 NC_003387.1 + 15790 0.7 0.29729
Target:  5'- cGCUuuaGCGUGAUCAUgucGCGCUGGGCu- -3'
miRNA:   3'- cUGA---UGCGCUAGUGu--CGCGGCCCGuu -5'
12981 5' -58 NC_003387.1 + 44197 0.7 0.29729
Target:  5'- uGCUGCGCG---GCAGUGCUGGGUg- -3'
miRNA:   3'- cUGAUGCGCuagUGUCGCGGCCCGuu -5'
12981 5' -58 NC_003387.1 + 29677 0.7 0.282725
Target:  5'- --gUGCGUGAUCgGCAcGcCGCCGGGCAc -3'
miRNA:   3'- cugAUGCGCUAG-UGU-C-GCGGCCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.