miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12982 3' -54.8 NC_003387.1 + 4756 0.66 0.721116
Target:  5'- cGUUGCCgcccAGCucGCGGUGcuucGCGGC-CCa -3'
miRNA:   3'- -CGACGG----UCGuuUGCCAC----UGUCGuGGa -5'
12982 3' -54.8 NC_003387.1 + 3839 0.66 0.721116
Target:  5'- --gGgCGGC--GCGGUaGGCGGCGCCg -3'
miRNA:   3'- cgaCgGUCGuuUGCCA-CUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 43081 0.66 0.721116
Target:  5'- --gGCUGGCAcACcagGGUGACGgGCGCCg -3'
miRNA:   3'- cgaCGGUCGUuUG---CCACUGU-CGUGGa -5'
12982 3' -54.8 NC_003387.1 + 38590 0.66 0.71022
Target:  5'- cUUGCCGuuaGAugGGUGGCAGUaauACCa -3'
miRNA:   3'- cGACGGUcg-UUugCCACUGUCG---UGGa -5'
12982 3' -54.8 NC_003387.1 + 1235 0.66 0.71022
Target:  5'- aGCUGCUccugcccggucuGGCGuucGCGGUGuCGGUugCg -3'
miRNA:   3'- -CGACGG------------UCGUu--UGCCACuGUCGugGa -5'
12982 3' -54.8 NC_003387.1 + 5684 0.66 0.71022
Target:  5'- uCUGCgCAGCAa--GGUGGCGGCGg-- -3'
miRNA:   3'- cGACG-GUCGUuugCCACUGUCGUgga -5'
12982 3' -54.8 NC_003387.1 + 22022 0.66 0.709126
Target:  5'- cGCUagaGCgCGGCGucgacauuccgugGGCGGUGGCGGCgaucACCg -3'
miRNA:   3'- -CGA---CG-GUCGU-------------UUGCCACUGUCG----UGGa -5'
12982 3' -54.8 NC_003387.1 + 40424 0.66 0.699245
Target:  5'- gGCga-CGGCGAAcCGGcccggcccggccUGACAGCGCCg -3'
miRNA:   3'- -CGacgGUCGUUU-GCC------------ACUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 49224 0.66 0.699245
Target:  5'- uCUGCCGGUcgAGGCGGccgaGCGGCugCUc -3'
miRNA:   3'- cGACGGUCG--UUUGCCac--UGUCGugGA- -5'
12982 3' -54.8 NC_003387.1 + 37916 0.66 0.699245
Target:  5'- cGCUGCC------CGGUGGCucGGCACCg -3'
miRNA:   3'- -CGACGGucguuuGCCACUG--UCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 5843 0.66 0.699245
Target:  5'- gGCUGCgCcGCA---GGUGGgGGCGCCg -3'
miRNA:   3'- -CGACG-GuCGUuugCCACUgUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 28734 0.66 0.688202
Target:  5'- uGgaGCgAGCAGGCGGUGcacaacCAGcCGCCc -3'
miRNA:   3'- -CgaCGgUCGUUUGCCACu-----GUC-GUGGa -5'
12982 3' -54.8 NC_003387.1 + 19586 0.66 0.688202
Target:  5'- cCUGCuCGGCGucGACGuGUGGCAGUcguuCCUu -3'
miRNA:   3'- cGACG-GUCGU--UUGC-CACUGUCGu---GGA- -5'
12982 3' -54.8 NC_003387.1 + 41212 0.66 0.688202
Target:  5'- cGCUGCCcgaauaagcacGGCAAcuccGCGGUGcAUGGCGgCg -3'
miRNA:   3'- -CGACGG-----------UCGUU----UGCCAC-UGUCGUgGa -5'
12982 3' -54.8 NC_003387.1 + 25600 0.66 0.688202
Target:  5'- aGCUGCCcggccacGUAGACGacgaACAGCACCa -3'
miRNA:   3'- -CGACGGu------CGUUUGCcac-UGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 25173 0.66 0.677103
Target:  5'- --gGCuCGGC--GCGGUGGCcccGGCGCCg -3'
miRNA:   3'- cgaCG-GUCGuuUGCCACUG---UCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 20990 0.66 0.677103
Target:  5'- -aUGCC-GCGAuagcucucguCGGcGACAGCGCCg -3'
miRNA:   3'- cgACGGuCGUUu---------GCCaCUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 34849 0.66 0.677103
Target:  5'- cGC-GCgGGCcuuGCGGUGAgAGCAgCCg -3'
miRNA:   3'- -CGaCGgUCGuu-UGCCACUgUCGU-GGa -5'
12982 3' -54.8 NC_003387.1 + 168 0.66 0.66596
Target:  5'- cCUGCUGGCcGACGGcaaGACGGUGCUc -3'
miRNA:   3'- cGACGGUCGuUUGCCa--CUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 47976 0.66 0.66596
Target:  5'- aGCUGggcggcaaCGGCAAACGGUGcuuCgAGCACUUc -3'
miRNA:   3'- -CGACg-------GUCGUUUGCCACu--G-UCGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.