miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12982 3' -54.8 NC_003387.1 + 44005 1.09 0.000904
Target:  5'- gGCUGCCAGCAAACGGUGACAGCACCUc -3'
miRNA:   3'- -CGACGGUCGUUUGCCACUGUCGUGGA- -5'
12982 3' -54.8 NC_003387.1 + 6408 0.68 0.565469
Target:  5'- cGCUGauuCCGGCc-GCGGUGACuGCggGCCa -3'
miRNA:   3'- -CGAC---GGUCGuuUGCCACUGuCG--UGGa -5'
12982 3' -54.8 NC_003387.1 + 13454 0.68 0.576532
Target:  5'- uGCUGUCgGGCAagggccgcGACGGcgagGAgGGCACCa -3'
miRNA:   3'- -CGACGG-UCGU--------UUGCCa---CUgUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 43081 0.66 0.721116
Target:  5'- --gGCUGGCAcACcagGGUGACGgGCGCCg -3'
miRNA:   3'- cgaCGGUCGUuUG---CCACUGU-CGUGGa -5'
12982 3' -54.8 NC_003387.1 + 52648 0.73 0.291381
Target:  5'- --aGCCAGCAAACGcccGCGGCGCCg -3'
miRNA:   3'- cgaCGGUCGUUUGCcacUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 27080 0.72 0.338694
Target:  5'- aGCUGCCgcAGCAGugGGU--CGGCAUCg -3'
miRNA:   3'- -CGACGG--UCGUUugCCAcuGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 48473 0.72 0.355658
Target:  5'- cGCUGUC-GCAGACGuUGuGCGGCGCCg -3'
miRNA:   3'- -CGACGGuCGUUUGCcAC-UGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 40498 0.71 0.382206
Target:  5'- cGCUGCgCuGGCGAccgcCGGUGGCccGGCACCg -3'
miRNA:   3'- -CGACG-G-UCGUUu---GCCACUG--UCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 31038 0.69 0.499479
Target:  5'- gGCgGCCAGCAcggcaccGGCGccGAUGGCACCg -3'
miRNA:   3'- -CGaCGGUCGU-------UUGCcaCUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 42789 0.68 0.564366
Target:  5'- gGCUGgUguggaaaGGCAcGCGGUGGCAGCcgaGCCc -3'
miRNA:   3'- -CGACgG-------UCGUuUGCCACUGUCG---UGGa -5'
12982 3' -54.8 NC_003387.1 + 49585 0.69 0.532648
Target:  5'- cGCUGCCGG---GCGGUGgccugGCAGUGCUg -3'
miRNA:   3'- -CGACGGUCguuUGCCAC-----UGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 24666 0.69 0.490019
Target:  5'- --cGCCAGCGccGAgGGUGACucGCGCUa -3'
miRNA:   3'- cgaCGGUCGU--UUgCCACUGu-CGUGGa -5'
12982 3' -54.8 NC_003387.1 + 51299 0.79 0.12182
Target:  5'- cCUGCCAGCucguCGGcGGCGGCGCCUc -3'
miRNA:   3'- cGACGGUCGuuu-GCCaCUGUCGUGGA- -5'
12982 3' -54.8 NC_003387.1 + 27176 0.68 0.543519
Target:  5'- uGCUGCCccucGGCGugUGGUGGCgcgAGCGCa- -3'
miRNA:   3'- -CGACGG----UCGUuuGCCACUG---UCGUGga -5'
12982 3' -54.8 NC_003387.1 + 2053 0.76 0.190652
Target:  5'- --aGCUGGCc-GCGGUGGCGGCGCCa -3'
miRNA:   3'- cgaCGGUCGuuUGCCACUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 25798 0.7 0.429284
Target:  5'- cCUGCuCGGCGGccuCGGUGGCGGCcugcucggcgGCCUg -3'
miRNA:   3'- cGACG-GUCGUUu--GCCACUGUCG----------UGGA- -5'
12982 3' -54.8 NC_003387.1 + 30421 0.68 0.550077
Target:  5'- aGCUGUCGGguGaaaccgaggccgagGCGGUGGCcgagcacGGCGCCc -3'
miRNA:   3'- -CGACGGUCguU--------------UGCCACUG-------UCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 3552 0.68 0.569888
Target:  5'- gGCUGCUcaggcgcucaacgagGGCGgcgugAAUGGUaacGGCGGCGCCUg -3'
miRNA:   3'- -CGACGG---------------UCGU-----UUGCCA---CUGUCGUGGA- -5'
12982 3' -54.8 NC_003387.1 + 6051 0.75 0.224279
Target:  5'- cGCUGCUGGCc-GCGGccaagcagGGCAGCACCg -3'
miRNA:   3'- -CGACGGUCGuuUGCCa-------CUGUCGUGGa -5'
12982 3' -54.8 NC_003387.1 + 10436 0.72 0.347102
Target:  5'- gGCUGUCGGCGGGCaucGACAGCGCgCUg -3'
miRNA:   3'- -CGACGGUCGUUUGccaCUGUCGUG-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.