miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12982 5' -55.1 NC_003387.1 + 10604 0.66 0.734012
Target:  5'- cCAGC-ACgGUCGCCUCGGUcauGCAGg -3'
miRNA:   3'- uGUUGaUGgCAGUGGGGCCAc--UGUCa -5'
12982 5' -55.1 NC_003387.1 + 46229 0.66 0.723374
Target:  5'- cGCAACUGCCuUCGCggCCCGGUuggucgcgccGACAa- -3'
miRNA:   3'- -UGUUGAUGGcAGUG--GGGCCA----------CUGUca -5'
12982 5' -55.1 NC_003387.1 + 47917 0.66 0.723374
Target:  5'- aACGACUugccguugugGCCGUCGCCgCGGgccugcGACAu- -3'
miRNA:   3'- -UGUUGA----------UGGCAGUGGgGCCa-----CUGUca -5'
12982 5' -55.1 NC_003387.1 + 35570 0.66 0.723374
Target:  5'- cCAGCUcaGCgCGg-GCCgCCGGUGACAGc -3'
miRNA:   3'- uGUUGA--UG-GCagUGG-GGCCACUGUCa -5'
12982 5' -55.1 NC_003387.1 + 8875 0.66 0.712645
Target:  5'- cCAAgUGCUGUCGCCCgaGGUGAa--- -3'
miRNA:   3'- uGUUgAUGGCAGUGGGg-CCACUguca -5'
12982 5' -55.1 NC_003387.1 + 33238 0.66 0.712645
Target:  5'- -gAACcACaCGUCGCCCgCGGUGGCc-- -3'
miRNA:   3'- ugUUGaUG-GCAGUGGG-GCCACUGuca -5'
12982 5' -55.1 NC_003387.1 + 8674 0.66 0.690956
Target:  5'- --uGC-ACUGUCACCggGGUGACGGUa -3'
miRNA:   3'- uguUGaUGGCAGUGGggCCACUGUCA- -5'
12982 5' -55.1 NC_003387.1 + 41146 0.67 0.658023
Target:  5'- cGCGAC-GCCGUaCGCCuuGGUGccgaucgccaccGCAGUc -3'
miRNA:   3'- -UGUUGaUGGCA-GUGGggCCAC------------UGUCA- -5'
12982 5' -55.1 NC_003387.1 + 33200 0.67 0.635927
Target:  5'- gGCAGCaGCgaGUUGCCCCGGuUGGCAu- -3'
miRNA:   3'- -UGUUGaUGg-CAGUGGGGCC-ACUGUca -5'
12982 5' -55.1 NC_003387.1 + 30653 0.68 0.613818
Target:  5'- cGCuACcGCCGUCGCCaaCGGUGcCGGUg -3'
miRNA:   3'- -UGuUGaUGGCAGUGGg-GCCACuGUCA- -5'
12982 5' -55.1 NC_003387.1 + 3682 0.68 0.602783
Target:  5'- aGCAGCgcaACCGUCGagCCGGUGAugcuCAGg -3'
miRNA:   3'- -UGUUGa--UGGCAGUggGGCCACU----GUCa -5'
12982 5' -55.1 NC_003387.1 + 22951 0.68 0.591773
Target:  5'- cGCAGCUgACCGcguggggCGCCCCGGUcaucgugucgGGCGGc -3'
miRNA:   3'- -UGUUGA-UGGCa------GUGGGGCCA----------CUGUCa -5'
12982 5' -55.1 NC_003387.1 + 20553 0.69 0.537405
Target:  5'- uCGGCUgcGCCGauaaCGCCCCGGUGggcguGCAGg -3'
miRNA:   3'- uGUUGA--UGGCa---GUGGGGCCAC-----UGUCa -5'
12982 5' -55.1 NC_003387.1 + 19046 0.69 0.537405
Target:  5'- cCGcCUGCCGaUCAUCCCGGUGucgcauaucggGCAGa -3'
miRNA:   3'- uGUuGAUGGC-AGUGGGGCCAC-----------UGUCa -5'
12982 5' -55.1 NC_003387.1 + 25044 0.69 0.526724
Target:  5'- uGCGug-ACCGUUACCCgCGGcUGACGGc -3'
miRNA:   3'- -UGUugaUGGCAGUGGG-GCC-ACUGUCa -5'
12982 5' -55.1 NC_003387.1 + 48096 0.69 0.526724
Target:  5'- gGC-GCUGCCGcugCGCCCgCGGUGGCu-- -3'
miRNA:   3'- -UGuUGAUGGCa--GUGGG-GCCACUGuca -5'
12982 5' -55.1 NC_003387.1 + 52137 0.7 0.484864
Target:  5'- cGCAugGCUACuCG-CACCCCGcGUGACGc- -3'
miRNA:   3'- -UGU--UGAUG-GCaGUGGGGC-CACUGUca -5'
12982 5' -55.1 NC_003387.1 + 12732 0.7 0.484864
Target:  5'- gGCAGacCUACCGcaaCACCUCGG-GGCAGUc -3'
miRNA:   3'- -UGUU--GAUGGCa--GUGGGGCCaCUGUCA- -5'
12982 5' -55.1 NC_003387.1 + 15960 0.7 0.474646
Target:  5'- cCGAgUGCCGUCGCUgaCGGUGACGc- -3'
miRNA:   3'- uGUUgAUGGCAGUGGg-GCCACUGUca -5'
12982 5' -55.1 NC_003387.1 + 29364 0.7 0.464536
Target:  5'- gGCGACcugACCGUCagcgGCgCCGGUGACGa- -3'
miRNA:   3'- -UGUUGa--UGGCAG----UGgGGCCACUGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.