miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12983 3' -63.2 NC_003387.1 + 29658 0.65 0.326592
Target:  5'- cGGCcUUGCGCacGGCGUagugcgugaucgGCACGCCg -3'
miRNA:   3'- uCCGcGACGCGcuCCGCGa-----------CGUGCGG- -5'
12983 3' -63.2 NC_003387.1 + 46119 0.66 0.320519
Target:  5'- cGGCuGCUgcgguggcucggGCGUGAGGUGCcGCGguCGUCg -3'
miRNA:   3'- uCCG-CGA------------CGCGCUCCGCGaCGU--GCGG- -5'
12983 3' -63.2 NC_003387.1 + 1610 0.66 0.320519
Target:  5'- cGGC-CUG-GCGAuuucggucGGCGCgUGCugGCUg -3'
miRNA:   3'- uCCGcGACgCGCU--------CCGCG-ACGugCGG- -5'
12983 3' -63.2 NC_003387.1 + 2297 0.66 0.320519
Target:  5'- uGGCGUacGC-CGAGGCGacgauCUGC-CGCCc -3'
miRNA:   3'- uCCGCGa-CGcGCUCCGC-----GACGuGCGG- -5'
12983 3' -63.2 NC_003387.1 + 19533 0.66 0.320519
Target:  5'- -uGCGCUGCGCGAucCGCaUGCgGCGgCg -3'
miRNA:   3'- ucCGCGACGCGCUccGCG-ACG-UGCgG- -5'
12983 3' -63.2 NC_003387.1 + 18318 0.66 0.320519
Target:  5'- cGGCGa-GUGCGucGuCGCUGguCGCGCCg -3'
miRNA:   3'- uCCGCgaCGCGCucC-GCGAC--GUGCGG- -5'
12983 3' -63.2 NC_003387.1 + 44644 0.66 0.320519
Target:  5'- uGGCGCcgaccgGCaGCGGGuuaGCGCggGC-CGCCa -3'
miRNA:   3'- uCCGCGa-----CG-CGCUC---CGCGa-CGuGCGG- -5'
12983 3' -63.2 NC_003387.1 + 2481 0.66 0.319766
Target:  5'- cGGCGCUGaCGUacGGCGCcucguaUGUgacggugACGCCg -3'
miRNA:   3'- uCCGCGAC-GCGcuCCGCG------ACG-------UGCGG- -5'
12983 3' -63.2 NC_003387.1 + 32494 0.66 0.313048
Target:  5'- cGGCGCcgugGUGCGAcgacugccGCuGCgUGCACGCCn -3'
miRNA:   3'- uCCGCGa---CGCGCUc-------CG-CG-ACGUGCGG- -5'
12983 3' -63.2 NC_003387.1 + 33208 0.66 0.313048
Target:  5'- -aGCGCaaGCGCGAGGCccGCUcgGCGaugGCCg -3'
miRNA:   3'- ucCGCGa-CGCGCUCCG--CGA--CGUg--CGG- -5'
12983 3' -63.2 NC_003387.1 + 27955 0.66 0.313048
Target:  5'- gGGGCGCUcgGCGUGcucGGCuuggccggugccGUUGCGgCGCCc -3'
miRNA:   3'- -UCCGCGA--CGCGCu--CCG------------CGACGU-GCGG- -5'
12983 3' -63.2 NC_003387.1 + 9411 0.66 0.313048
Target:  5'- cGGCGCUGUgaucGCGuAGucgcccagcaccGCGCUgaGCACGUCc -3'
miRNA:   3'- uCCGCGACG----CGC-UC------------CGCGA--CGUGCGG- -5'
12983 3' -63.2 NC_003387.1 + 18222 0.66 0.313048
Target:  5'- cGGCGCcGCaGCGgcGGGCGUacucGUAgGCCg -3'
miRNA:   3'- uCCGCGaCG-CGC--UCCGCGa---CGUgCGG- -5'
12983 3' -63.2 NC_003387.1 + 22546 0.66 0.310096
Target:  5'- aGGGCugGCUcGaCGCGGuGGCGCaggcagauaacccGCACGCCc -3'
miRNA:   3'- -UCCG--CGA-C-GCGCU-CCGCGa------------CGUGCGG- -5'
12983 3' -63.2 NC_003387.1 + 23688 0.66 0.305709
Target:  5'- cGGCGUgaGCcgaGGGGCGCUGUuuGCUg -3'
miRNA:   3'- uCCGCGa-CGcg-CUCCGCGACGugCGG- -5'
12983 3' -63.2 NC_003387.1 + 33439 0.66 0.305709
Target:  5'- cGG-GCUGCcCGAGGCGgU-CAgGCCg -3'
miRNA:   3'- uCCgCGACGcGCUCCGCgAcGUgCGG- -5'
12983 3' -63.2 NC_003387.1 + 5259 0.66 0.305709
Target:  5'- --cCGCUGUGCG-GGCGUaccUGCAgGCg -3'
miRNA:   3'- uccGCGACGCGCuCCGCG---ACGUgCGg -5'
12983 3' -63.2 NC_003387.1 + 44922 0.66 0.305709
Target:  5'- cAGGCGUUGCaGCucGGC-CUGCACcUCg -3'
miRNA:   3'- -UCCGCGACG-CGcuCCGcGACGUGcGG- -5'
12983 3' -63.2 NC_003387.1 + 42201 0.66 0.304982
Target:  5'- cGGGCG-UGCGCGAgcaggacGGCGaccgGCGCaCCg -3'
miRNA:   3'- -UCCGCgACGCGCU-------CCGCga--CGUGcGG- -5'
12983 3' -63.2 NC_003387.1 + 33586 0.66 0.301369
Target:  5'- -aGCGCgUGCGCGAcgaagaucccgccgaGGUGUgGCACGaCCu -3'
miRNA:   3'- ucCGCG-ACGCGCU---------------CCGCGaCGUGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.