miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12983 5' -53.8 NC_003387.1 + 19943 0.66 0.767101
Target:  5'- -cGACCc-GGCGGUaCGCGGCGGgUGg -3'
miRNA:   3'- caCUGGcaUUGCCGaGUGCCGUCaAC- -5'
12983 5' -53.8 NC_003387.1 + 14915 0.66 0.756704
Target:  5'- -cGA-CGUGACGGCUgCGCGGCu---- -3'
miRNA:   3'- caCUgGCAUUGCCGA-GUGCCGucaac -5'
12983 5' -53.8 NC_003387.1 + 1206 0.67 0.713923
Target:  5'- gGUGGCCGUcGACGGggCAUGGCu---- -3'
miRNA:   3'- -CACUGGCA-UUGCCgaGUGCCGucaac -5'
12983 5' -53.8 NC_003387.1 + 22162 0.67 0.713923
Target:  5'- -cGGCgCGUAcCGGC-CGCGGCGGc-- -3'
miRNA:   3'- caCUG-GCAUuGCCGaGUGCCGUCaac -5'
12983 5' -53.8 NC_003387.1 + 27647 0.67 0.702989
Target:  5'- -cGACuCGUGggucaACGGCg-GCGGCAGUa- -3'
miRNA:   3'- caCUG-GCAU-----UGCCGagUGCCGUCAac -5'
12983 5' -53.8 NC_003387.1 + 44182 0.67 0.702989
Target:  5'- gGUGACCu--GCGGaaaugcugCGCGGCAGUg- -3'
miRNA:   3'- -CACUGGcauUGCCga------GUGCCGUCAac -5'
12983 5' -53.8 NC_003387.1 + 10416 0.67 0.702989
Target:  5'- -cGGCaagcaGU-ACGGCUCGCGGCuGUc- -3'
miRNA:   3'- caCUGg----CAuUGCCGAGUGCCGuCAac -5'
12983 5' -53.8 NC_003387.1 + 20469 0.68 0.680919
Target:  5'- -aGAUCGgcGCGGCguucCGCGGguGggGu -3'
miRNA:   3'- caCUGGCauUGCCGa---GUGCCguCaaC- -5'
12983 5' -53.8 NC_003387.1 + 37134 0.68 0.669806
Target:  5'- -gGGCCGUGAUGGUUgggcacucgCugGGCGGg-- -3'
miRNA:   3'- caCUGGCAUUGCCGA---------GugCCGUCaac -5'
12983 5' -53.8 NC_003387.1 + 31025 0.68 0.658656
Target:  5'- cGUGcGCCGggGCGGCggccagCACGGCAc--- -3'
miRNA:   3'- -CAC-UGGCauUGCCGa-----GUGCCGUcaac -5'
12983 5' -53.8 NC_003387.1 + 417 0.68 0.647481
Target:  5'- -aGGCUGUGcugGCgguGGCUUAUGGCGGUUa -3'
miRNA:   3'- caCUGGCAU---UG---CCGAGUGCCGUCAAc -5'
12983 5' -53.8 NC_003387.1 + 28682 0.68 0.623979
Target:  5'- cGUGACCGUGauucACGGC-CACcaguggcgcaaagGGCAGg-- -3'
miRNA:   3'- -CACUGGCAU----UGCCGaGUG-------------CCGUCaac -5'
12983 5' -53.8 NC_003387.1 + 24949 0.69 0.613911
Target:  5'- -gGGCCGccUGAUGGC-CugGGuCGGUUGg -3'
miRNA:   3'- caCUGGC--AUUGCCGaGugCC-GUCAAC- -5'
12983 5' -53.8 NC_003387.1 + 21570 0.69 0.60274
Target:  5'- -aGACCGUGGCccaGGCgCGCGGCAu--- -3'
miRNA:   3'- caCUGGCAUUG---CCGaGUGCCGUcaac -5'
12983 5' -53.8 NC_003387.1 + 22049 0.7 0.558409
Target:  5'- -gGGCgGUGGCGGCgaUCAcCGGCAccGUUGg -3'
miRNA:   3'- caCUGgCAUUGCCG--AGU-GCCGU--CAAC- -5'
12983 5' -53.8 NC_003387.1 + 8524 0.71 0.483439
Target:  5'- -gGGCCGac-CGGCUCGCgGGUAGUUa -3'
miRNA:   3'- caCUGGCauuGCCGAGUG-CCGUCAAc -5'
12983 5' -53.8 NC_003387.1 + 7160 0.71 0.452795
Target:  5'- -cGGCCGUgccGACGaGCUgGCGGCGGa-- -3'
miRNA:   3'- caCUGGCA---UUGC-CGAgUGCCGUCaac -5'
12983 5' -53.8 NC_003387.1 + 25046 0.74 0.341963
Target:  5'- cGUGACCGUuacccGCGGCUgACGGcCAGc-- -3'
miRNA:   3'- -CACUGGCAu----UGCCGAgUGCC-GUCaac -5'
12983 5' -53.8 NC_003387.1 + 30772 0.79 0.150357
Target:  5'- cGUGACCGUGuACuGCUCGCGGUcGUUGa -3'
miRNA:   3'- -CACUGGCAU-UGcCGAGUGCCGuCAAC- -5'
12983 5' -53.8 NC_003387.1 + 44490 1.07 0.001696
Target:  5'- gGUGACCGUAACGGCUCACGGCAGUUGc -3'
miRNA:   3'- -CACUGGCAUUGCCGAGUGCCGUCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.