miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12984 3' -63.2 NC_003387.1 + 48466 0.66 0.305569
Target:  5'- cGCGAaaucucUUGCgGCguagugagGCCGUCGcGGCGGg -3'
miRNA:   3'- -CGCU------AGCGgCGa-------CGGCGGCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 38033 0.66 0.305569
Target:  5'- -gGAUCGCgGCgacggcGCC-CCGAucgGGCGGUg -3'
miRNA:   3'- cgCUAGCGgCGa-----CGGcGGCU---CCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 30217 0.66 0.305569
Target:  5'- cCGAcgUCGagCGC-GCCGCCGAGGCcGUc -3'
miRNA:   3'- cGCU--AGCg-GCGaCGGCGGCUCCGcCA- -5'
12984 3' -63.2 NC_003387.1 + 42031 0.66 0.305569
Target:  5'- uUGAUaccgGCgGCcaCCGCCGAGGCGGc -3'
miRNA:   3'- cGCUAg---CGgCGacGGCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 27222 0.67 0.301275
Target:  5'- uGCGGUCGaCCcggccgagcugacacGC-GCgGUCGAGGCGGc -3'
miRNA:   3'- -CGCUAGC-GG---------------CGaCGgCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 43825 0.67 0.298438
Target:  5'- aCGAUCGgCGagggcgagGCCgagGUCGGGGCGGUg -3'
miRNA:   3'- cGCUAGCgGCga------CGG---CGGCUCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 11390 0.67 0.298438
Target:  5'- gGCGAUCggcgccacgcugGCCGCgaucgGCC-CCGAGGUGc- -3'
miRNA:   3'- -CGCUAG------------CGGCGa----CGGcGGCUCCGCca -5'
12984 3' -63.2 NC_003387.1 + 52034 0.67 0.298438
Target:  5'- gGCGAUCaagGCC-CUGCguacccUGCCGGGGCuGGg -3'
miRNA:   3'- -CGCUAG---CGGcGACG------GCGGCUCCG-CCa -5'
12984 3' -63.2 NC_003387.1 + 2171 0.67 0.298438
Target:  5'- cGCGAgcagcUCGgCGCcuugGUCGCCGAcauguGGCGGc -3'
miRNA:   3'- -CGCU-----AGCgGCGa---CGGCGGCU-----CCGCCa -5'
12984 3' -63.2 NC_003387.1 + 45555 0.67 0.298438
Target:  5'- gGCGAUcCGCCGCcaGCUcgucggcacgGCCGAGGagcCGGg -3'
miRNA:   3'- -CGCUA-GCGGCGa-CGG----------CGGCUCC---GCCa -5'
12984 3' -63.2 NC_003387.1 + 32211 0.67 0.298438
Target:  5'- gGCGcAUCGCuacCGCUGuuGCCGgugucGGaGCGGa -3'
miRNA:   3'- -CGC-UAGCG---GCGACggCGGC-----UC-CGCCa -5'
12984 3' -63.2 NC_003387.1 + 17130 0.67 0.295621
Target:  5'- gGCGAUCGCUGUgucgaccagcucgGCCagggcGCCGAGGUaGUc -3'
miRNA:   3'- -CGCUAGCGGCGa------------CGG-----CGGCUCCGcCA- -5'
12984 3' -63.2 NC_003387.1 + 39075 0.67 0.291436
Target:  5'- gGCGAcCGa-GCcGCCGCCGAcGGUGGc -3'
miRNA:   3'- -CGCUaGCggCGaCGGCGGCU-CCGCCa -5'
12984 3' -63.2 NC_003387.1 + 23418 0.67 0.291436
Target:  5'- gGCGcUCGugcCCGCgGUCGCCGGGGaacaGGg -3'
miRNA:   3'- -CGCuAGC---GGCGaCGGCGGCUCCg---CCa -5'
12984 3' -63.2 NC_003387.1 + 2379 0.67 0.291436
Target:  5'- cGCGGUCa-CGUUGCCGC--GGGCGGc -3'
miRNA:   3'- -CGCUAGcgGCGACGGCGgcUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 9523 0.67 0.291436
Target:  5'- cCGAUCGCCGCguacccgGCCaGCCGuuGCa-- -3'
miRNA:   3'- cGCUAGCGGCGa------CGG-CGGCucCGcca -5'
12984 3' -63.2 NC_003387.1 + 50296 0.67 0.291436
Target:  5'- uGCGGUUG-CGCUGCCacaucuCCcAGGCGGg -3'
miRNA:   3'- -CGCUAGCgGCGACGGc-----GGcUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 37808 0.67 0.284563
Target:  5'- cGCGGUCGCagcaGCgcgcgaucggGCCGagCGAGGuCGGg -3'
miRNA:   3'- -CGCUAGCGg---CGa---------CGGCg-GCUCC-GCCa -5'
12984 3' -63.2 NC_003387.1 + 17599 0.67 0.279828
Target:  5'- aGUGGcCGCCGCUugagcagGCCGCCGAccucgaaccguugaaGGCGa- -3'
miRNA:   3'- -CGCUaGCGGCGA-------CGGCGGCU---------------CCGCca -5'
12984 3' -63.2 NC_003387.1 + 31816 0.67 0.277818
Target:  5'- -gGGUCGCCGCcgaucgcaUccuccaaugacGCCGCCGGGGCa-- -3'
miRNA:   3'- cgCUAGCGGCG--------A-----------CGGCGGCUCCGcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.