Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 45014 | 1.08 | 0.002211 |
Target: 5'- aCUACCGCAUCGAGCUGCUGAUCAAGUc -3' miRNA: 3'- -GAUGGCGUAGCUCGACGACUAGUUCA- -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 34436 | 0.74 | 0.408794 |
Target: 5'- -gGCCGgGUCG-GC-GCUGGUCGAGUa -3' miRNA: 3'- gaUGGCgUAGCuCGaCGACUAGUUCA- -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 48527 | 0.73 | 0.428389 |
Target: 5'- aCUGCUGCAcguagUCGGGCgGCUGAUaCGAGc -3' miRNA: 3'- -GAUGGCGU-----AGCUCGaCGACUA-GUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 29709 | 0.73 | 0.438392 |
Target: 5'- aCUGCUGCGUCGAGCcGgUGAUgCGGGc -3' miRNA: 3'- -GAUGGCGUAGCUCGaCgACUA-GUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 46759 | 0.69 | 0.702586 |
Target: 5'- -gGCCGgGUCGAGCgacUcgcgguucggcgaGCUGAUCGAGa -3' miRNA: 3'- gaUGGCgUAGCUCG---A-------------CGACUAGUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 33793 | 0.68 | 0.725941 |
Target: 5'- -gACCGUcgCGAgaaGCUGCguagGGUCGAGc -3' miRNA: 3'- gaUGGCGuaGCU---CGACGa---CUAGUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 41101 | 0.68 | 0.730343 |
Target: 5'- -aGCCGC---GAGCUGCUGGcgcugcacgaccggaUCAAGUg -3' miRNA: 3'- gaUGGCGuagCUCGACGACU---------------AGUUCA- -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 39713 | 0.68 | 0.736914 |
Target: 5'- -aGCgGCAgaUCGGGCUGCUGA-CGAc- -3' miRNA: 3'- gaUGgCGU--AGCUCGACGACUaGUUca -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 27558 | 0.68 | 0.747772 |
Target: 5'- -gACCGCcUCGGGCcGCUGAcaCGAGc -3' miRNA: 3'- gaUGGCGuAGCUCGaCGACUa-GUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 33431 | 0.68 | 0.758505 |
Target: 5'- -aGCUGgAUCGGGCUGCccgaggcGGUCAGGc -3' miRNA: 3'- gaUGGCgUAGCUCGACGa------CUAGUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 9701 | 0.68 | 0.758505 |
Target: 5'- -gGCCGUGaCG-GCggGCUGAUCGAGg -3' miRNA: 3'- gaUGGCGUaGCuCGa-CGACUAGUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 19963 | 0.67 | 0.779538 |
Target: 5'- gUACCGCGUCGAcuucacaacGCUGCcc-UCGGGg -3' miRNA: 3'- gAUGGCGUAGCU---------CGACGacuAGUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 34520 | 0.67 | 0.819528 |
Target: 5'- -cGCCGCGauccUCGGGCUGCccGUCGAc- -3' miRNA: 3'- gaUGGCGU----AGCUCGACGacUAGUUca -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 45696 | 0.66 | 0.826198 |
Target: 5'- cCUGCCGUugaacgcgaaagcgGcCGAGCUGCUGcgCGAc- -3' miRNA: 3'- -GAUGGCG--------------UaGCUCGACGACuaGUUca -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 11268 | 0.66 | 0.838296 |
Target: 5'- -gGCCGCGUCG-GC-GaCUcGAUCAAGg -3' miRNA: 3'- gaUGGCGUAGCuCGaC-GA-CUAGUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 27902 | 0.66 | 0.838296 |
Target: 5'- -aGCCGCccgaguacgcCGAGCUGCUGcgcCAGGUc -3' miRNA: 3'- gaUGGCGua--------GCUCGACGACua-GUUCA- -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 46693 | 0.66 | 0.838296 |
Target: 5'- cCUGCCGCAccUCGuGCcGCUGGacgcCAAGc -3' miRNA: 3'- -GAUGGCGU--AGCuCGaCGACUa---GUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 51888 | 0.66 | 0.847333 |
Target: 5'- -gGCCGUcgCGAGaaGCUcGUCGAGg -3' miRNA: 3'- gaUGGCGuaGCUCgaCGAcUAGUUCa -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 6820 | 0.66 | 0.864669 |
Target: 5'- gUACUGCAgaUCGGGCgGCaGGUCGAu- -3' miRNA: 3'- gAUGGCGU--AGCUCGaCGaCUAGUUca -5' |
|||||||
12984 | 5' | -51.9 | NC_003387.1 | + | 42162 | 0.66 | 0.864669 |
Target: 5'- -cGCUGUcgAUCGAGgaGCUGAcCGAGc -3' miRNA: 3'- gaUGGCG--UAGCUCgaCGACUaGUUCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home