miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12985 3' -61.2 NC_003387.1 + 10880 0.66 0.43526
Target:  5'- -cGC-CGUCGGcCGCuGGCCGAccaGGAuGCUc -3'
miRNA:   3'- guCGaGCAGCC-GUG-CCGGCU---CCU-CGG- -5'
12985 3' -61.2 NC_003387.1 + 45615 0.66 0.43526
Target:  5'- cCGGCUgcaggaGUCGGCguACGGC-GAGGcgaagaucGGCCg -3'
miRNA:   3'- -GUCGAg-----CAGCCG--UGCCGgCUCC--------UCGG- -5'
12985 3' -61.2 NC_003387.1 + 10334 0.66 0.43526
Target:  5'- uCAGCcgcggCGUCGaUACGGCCGAccccGGuaagGGCCu -3'
miRNA:   3'- -GUCGa----GCAGCcGUGCCGGCU----CC----UCGG- -5'
12985 3' -61.2 NC_003387.1 + 36456 0.66 0.43526
Target:  5'- gCAGCUCGcccaGGCGCaGCCGAuGGcaauGCa -3'
miRNA:   3'- -GUCGAGCag--CCGUGcCGGCU-CCu---CGg -5'
12985 3' -61.2 NC_003387.1 + 49336 0.66 0.43526
Target:  5'- -uGCUCGaUCGGgAUGcccGCCGAGGccAGCUu -3'
miRNA:   3'- guCGAGC-AGCCgUGC---CGGCUCC--UCGG- -5'
12985 3' -61.2 NC_003387.1 + 49418 0.66 0.43526
Target:  5'- aCAGCaCcUCGGCgcccgagucgGCGGCCGugucGGGGUCg -3'
miRNA:   3'- -GUCGaGcAGCCG----------UGCCGGCu---CCUCGG- -5'
12985 3' -61.2 NC_003387.1 + 1376 0.66 0.43526
Target:  5'- -cGC-CGUCGGCGCucagcgGGUCGGGGucGCg -3'
miRNA:   3'- guCGaGCAGCCGUG------CCGGCUCCu-CGg -5'
12985 3' -61.2 NC_003387.1 + 26624 0.66 0.426041
Target:  5'- aAGCUgGaCGGCAU-GCgGGGGAuGCCa -3'
miRNA:   3'- gUCGAgCaGCCGUGcCGgCUCCU-CGG- -5'
12985 3' -61.2 NC_003387.1 + 45057 0.66 0.426041
Target:  5'- gCAGgUCGcCGaGCGC-GUCGAGG-GCCg -3'
miRNA:   3'- -GUCgAGCaGC-CGUGcCGGCUCCuCGG- -5'
12985 3' -61.2 NC_003387.1 + 39759 0.66 0.426041
Target:  5'- cCAGCUCGcCGaCGCGGUgcgcaagcgcaaCGAGGccagcGGCCu -3'
miRNA:   3'- -GUCGAGCaGCcGUGCCG------------GCUCC-----UCGG- -5'
12985 3' -61.2 NC_003387.1 + 18540 0.66 0.426041
Target:  5'- uGGCUUGugcgcgagucguUCGaGCGCaaGGCCGAGGGcgacGCCc -3'
miRNA:   3'- gUCGAGC------------AGC-CGUG--CCGGCUCCU----CGG- -5'
12985 3' -61.2 NC_003387.1 + 29829 0.66 0.426041
Target:  5'- uGGCcgucgCGUCGGUcuuGCCGGGGucAGCCg -3'
miRNA:   3'- gUCGa----GCAGCCGugcCGGCUCC--UCGG- -5'
12985 3' -61.2 NC_003387.1 + 15939 0.66 0.426041
Target:  5'- uGGCgugcgCGUCGGCcaGC-GCCGAGu-GCCg -3'
miRNA:   3'- gUCGa----GCAGCCG--UGcCGGCUCcuCGG- -5'
12985 3' -61.2 NC_003387.1 + 7986 0.66 0.426041
Target:  5'- -uGCUgCGcuUCGGCGCcccGGCCGGGcGAGgCa -3'
miRNA:   3'- guCGA-GC--AGCCGUG---CCGGCUC-CUCgG- -5'
12985 3' -61.2 NC_003387.1 + 28245 0.66 0.416939
Target:  5'- gAGCagaUCGUCGaGCGguucguacaguCGGUCGAGGccGCCa -3'
miRNA:   3'- gUCG---AGCAGC-CGU-----------GCCGGCUCCu-CGG- -5'
12985 3' -61.2 NC_003387.1 + 17187 0.66 0.416939
Target:  5'- gGGCggCGaCGGCGCgaaaguGGCCGAGGccgaGGCa -3'
miRNA:   3'- gUCGa-GCaGCCGUG------CCGGCUCC----UCGg -5'
12985 3' -61.2 NC_003387.1 + 42359 0.66 0.416939
Target:  5'- cCAGCUUG-CGGCccaGGCCcuuaccGGGGucGGCCg -3'
miRNA:   3'- -GUCGAGCaGCCGug-CCGG------CUCC--UCGG- -5'
12985 3' -61.2 NC_003387.1 + 30420 0.66 0.415133
Target:  5'- gAGCU-GUCGGgugaaaccgaGGCCGAGGcgguGGCCg -3'
miRNA:   3'- gUCGAgCAGCCgug-------CCGGCUCC----UCGG- -5'
12985 3' -61.2 NC_003387.1 + 46347 0.66 0.407957
Target:  5'- -cGCaaggCGUCGccCGCGGCCGAGGccaAGCg -3'
miRNA:   3'- guCGa---GCAGCc-GUGCCGGCUCC---UCGg -5'
12985 3' -61.2 NC_003387.1 + 17764 0.66 0.402626
Target:  5'- -cGCUCaucaCGGCGuCGGCCGAaacgauccccaugucGGAGCg -3'
miRNA:   3'- guCGAGca--GCCGU-GCCGGCU---------------CCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.