miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12985 3' -61.2 NC_003387.1 + 10880 0.66 0.43526
Target:  5'- -cGC-CGUCGGcCGCuGGCCGAccaGGAuGCUc -3'
miRNA:   3'- guCGaGCAGCC-GUG-CCGGCU---CCU-CGG- -5'
12985 3' -61.2 NC_003387.1 + 200 0.66 0.395587
Target:  5'- cCAGCUCGgCGGCuugucgcucuugucGCGGuuGcacuugcGGuGAGCCg -3'
miRNA:   3'- -GUCGAGCaGCCG--------------UGCCggC-------UC-CUCGG- -5'
12985 3' -61.2 NC_003387.1 + 44023 0.66 0.39036
Target:  5'- gCGGCUCGUCGaCGuCGGUCGGcagcGGcguGCCg -3'
miRNA:   3'- -GUCGAGCAGCcGU-GCCGGCU----CCu--CGG- -5'
12985 3' -61.2 NC_003387.1 + 38558 0.66 0.39036
Target:  5'- -cGCcCG-CGGCcCGGCCcggcGAGGuGCCa -3'
miRNA:   3'- guCGaGCaGCCGuGCCGG----CUCCuCGG- -5'
12985 3' -61.2 NC_003387.1 + 27148 0.66 0.39036
Target:  5'- -cGCcgggGUCGGCGCcGCCGGGGAacguguGCCc -3'
miRNA:   3'- guCGag--CAGCCGUGcCGGCUCCU------CGG- -5'
12985 3' -61.2 NC_003387.1 + 16037 0.66 0.38175
Target:  5'- uCAGCUUGcccgCGGUgaacGCGGCCaggucGGcGAGCCg -3'
miRNA:   3'- -GUCGAGCa---GCCG----UGCCGGc----UC-CUCGG- -5'
12985 3' -61.2 NC_003387.1 + 28892 0.66 0.38175
Target:  5'- gCGGCUUa--GGCGCGGgCGccGGGCCa -3'
miRNA:   3'- -GUCGAGcagCCGUGCCgGCucCUCGG- -5'
12985 3' -61.2 NC_003387.1 + 48202 0.66 0.38175
Target:  5'- -cGCacCGgCGGCgGCGGCCGAGGuGaCCc -3'
miRNA:   3'- guCGa-GCaGCCG-UGCCGGCUCCuC-GG- -5'
12985 3' -61.2 NC_003387.1 + 44719 0.66 0.399096
Target:  5'- -cGUUCGUUaugccucGCcCGGCCGGGGcGCCg -3'
miRNA:   3'- guCGAGCAGc------CGuGCCGGCUCCuCGG- -5'
12985 3' -61.2 NC_003387.1 + 1208 0.66 0.399096
Target:  5'- uGGC-CGUCgacggGGCAUGGCuCGucGAGCUg -3'
miRNA:   3'- gUCGaGCAG-----CCGUGCCG-GCucCUCGG- -5'
12985 3' -61.2 NC_003387.1 + 6205 0.66 0.399096
Target:  5'- -cGC-CGUUGGUGCagucGCCGAGcGAGCUg -3'
miRNA:   3'- guCGaGCAGCCGUGc---CGGCUC-CUCGG- -5'
12985 3' -61.2 NC_003387.1 + 41962 0.66 0.399096
Target:  5'- aGGCUCGUacCGGCgaucGCGGCCGugucAGcGGUCa -3'
miRNA:   3'- gUCGAGCA--GCCG----UGCCGGC----UCcUCGG- -5'
12985 3' -61.2 NC_003387.1 + 1376 0.66 0.43526
Target:  5'- -cGC-CGUCGGCGCucagcgGGUCGGGGucGCg -3'
miRNA:   3'- guCGaGCAGCCGUG------CCGGCUCCu-CGg -5'
12985 3' -61.2 NC_003387.1 + 49418 0.66 0.43526
Target:  5'- aCAGCaCcUCGGCgcccgagucgGCGGCCGugucGGGGUCg -3'
miRNA:   3'- -GUCGaGcAGCCG----------UGCCGGCu---CCUCGG- -5'
12985 3' -61.2 NC_003387.1 + 49336 0.66 0.43526
Target:  5'- -uGCUCGaUCGGgAUGcccGCCGAGGccAGCUu -3'
miRNA:   3'- guCGAGC-AGCCgUGC---CGGCUCC--UCGG- -5'
12985 3' -61.2 NC_003387.1 + 29829 0.66 0.426041
Target:  5'- uGGCcgucgCGUCGGUcuuGCCGGGGucAGCCg -3'
miRNA:   3'- gUCGa----GCAGCCGugcCGGCUCC--UCGG- -5'
12985 3' -61.2 NC_003387.1 + 15939 0.66 0.426041
Target:  5'- uGGCgugcgCGUCGGCcaGC-GCCGAGu-GCCg -3'
miRNA:   3'- gUCGa----GCAGCCG--UGcCGGCUCcuCGG- -5'
12985 3' -61.2 NC_003387.1 + 7986 0.66 0.426041
Target:  5'- -uGCUgCGcuUCGGCGCcccGGCCGGGcGAGgCa -3'
miRNA:   3'- guCGA-GC--AGCCGUG---CCGGCUC-CUCgG- -5'
12985 3' -61.2 NC_003387.1 + 42359 0.66 0.416939
Target:  5'- cCAGCUUG-CGGCccaGGCCcuuaccGGGGucGGCCg -3'
miRNA:   3'- -GUCGAGCaGCCGug-CCGG------CUCC--UCGG- -5'
12985 3' -61.2 NC_003387.1 + 48275 0.66 0.399096
Target:  5'- uCGGCUCGgccuUCGGCGCGGgCuCGGcGAacGCCu -3'
miRNA:   3'- -GUCGAGC----AGCCGUGCC-G-GCUcCU--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.