Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12985 | 3' | -61.2 | NC_003387.1 | + | 12452 | 0.66 | 0.399096 |
Target: 5'- aGGUUCGcuggCGGCGgccUGGCCGcGG-GCCu -3' miRNA: 3'- gUCGAGCa---GCCGU---GCCGGCuCCuCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 19330 | 0.66 | 0.399096 |
Target: 5'- aCAGCgacgagCG-CGGCGagaaccUGGCCGGGcGGGCUc -3' miRNA: 3'- -GUCGa-----GCaGCCGU------GCCGGCUC-CUCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 1208 | 0.66 | 0.399096 |
Target: 5'- uGGC-CGUCgacggGGCAUGGCuCGucGAGCUg -3' miRNA: 3'- gUCGaGCAG-----CCGUGCCG-GCucCUCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 44719 | 0.66 | 0.399096 |
Target: 5'- -cGUUCGUUaugccucGCcCGGCCGGGGcGCCg -3' miRNA: 3'- guCGAGCAGc------CGuGCCGGCUCCuCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 6205 | 0.66 | 0.399096 |
Target: 5'- -cGC-CGUUGGUGCagucGCCGAGcGAGCUg -3' miRNA: 3'- guCGaGCAGCCGUGc---CGGCUC-CUCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 51900 | 0.66 | 0.399096 |
Target: 5'- aAGCUCGUCgaGGUGCuGCCcGAGcuGGCCg -3' miRNA: 3'- gUCGAGCAG--CCGUGcCGG-CUCc-UCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 41962 | 0.66 | 0.399096 |
Target: 5'- aGGCUCGUacCGGCgaucGCGGCCGugucAGcGGUCa -3' miRNA: 3'- gUCGAGCA--GCCG----UGCCGGC----UCcUCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 48275 | 0.66 | 0.399096 |
Target: 5'- uCGGCUCGgccuUCGGCGCGGgCuCGGcGAacGCCu -3' miRNA: 3'- -GUCGAGC----AGCCGUGCC-G-GCUcCU--CGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 200 | 0.66 | 0.395587 |
Target: 5'- cCAGCUCGgCGGCuugucgcucuugucGCGGuuGcacuugcGGuGAGCCg -3' miRNA: 3'- -GUCGAGCaGCCG--------------UGCCggC-------UC-CUCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 27148 | 0.66 | 0.39036 |
Target: 5'- -cGCcgggGUCGGCGCcGCCGGGGAacguguGCCc -3' miRNA: 3'- guCGag--CAGCCGUGcCGGCUCCU------CGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 44023 | 0.66 | 0.39036 |
Target: 5'- gCGGCUCGUCGaCGuCGGUCGGcagcGGcguGCCg -3' miRNA: 3'- -GUCGAGCAGCcGU-GCCGGCU----CCu--CGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 38558 | 0.66 | 0.39036 |
Target: 5'- -cGCcCG-CGGCcCGGCCcggcGAGGuGCCa -3' miRNA: 3'- guCGaGCaGCCGuGCCGG----CUCCuCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 48202 | 0.66 | 0.38175 |
Target: 5'- -cGCacCGgCGGCgGCGGCCGAGGuGaCCc -3' miRNA: 3'- guCGa-GCaGCCG-UGCCGGCUCCuC-GG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 16037 | 0.66 | 0.38175 |
Target: 5'- uCAGCUUGcccgCGGUgaacGCGGCCaggucGGcGAGCCg -3' miRNA: 3'- -GUCGAGCa---GCCG----UGCCGGc----UC-CUCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 28892 | 0.66 | 0.38175 |
Target: 5'- gCGGCUUa--GGCGCGGgCGccGGGCCa -3' miRNA: 3'- -GUCGAGcagCCGUGCCgGCucCUCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 5318 | 0.67 | 0.373267 |
Target: 5'- gGGCUCGg-GGCGgGGCCGGuu-GCCc -3' miRNA: 3'- gUCGAGCagCCGUgCCGGCUccuCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 1812 | 0.67 | 0.364914 |
Target: 5'- aAGCUgacCGGCGCGGCCGAuauGGcgaagggcugcGGCCu -3' miRNA: 3'- gUCGAgcaGCCGUGCCGGCU---CC-----------UCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 3346 | 0.67 | 0.35669 |
Target: 5'- -cGCUCGuUUGGCGCGGUCGucgacGGcaucaccaagcuGGCCu -3' miRNA: 3'- guCGAGC-AGCCGUGCCGGCu----CC------------UCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 47093 | 0.67 | 0.35669 |
Target: 5'- uCGGCUUGcUCGGCGCGuuCGAGc-GCCu -3' miRNA: 3'- -GUCGAGC-AGCCGUGCcgGCUCcuCGG- -5' |
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12985 | 3' | -61.2 | NC_003387.1 | + | 30249 | 0.67 | 0.35669 |
Target: 5'- cCGGgUCGUCGGgGuCGgcGCCGGGGucgggcAGCCa -3' miRNA: 3'- -GUCgAGCAGCCgU-GC--CGGCUCC------UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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