Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12986 | 3' | -54.3 | NC_003387.1 | + | 6684 | 0.66 | 0.790294 |
Target: 5'- -aGGUGAUuGCCGACAg---CUCGCGg -3' miRNA: 3'- cgCUACUAcCGGCUGUuacaGGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 18313 | 0.66 | 0.784369 |
Target: 5'- gGCGGUGGcgcccggcaacggcgUGGCCGuCG-UG-CCCGCc -3' miRNA: 3'- -CGCUACU---------------ACCGGCuGUuACaGGGCGc -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 39196 | 0.66 | 0.780387 |
Target: 5'- aGCGAgcccaGGCCGACGcUGUCa-GCGa -3' miRNA: 3'- -CGCUacua-CCGGCUGUuACAGggCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 23360 | 0.66 | 0.780387 |
Target: 5'- cGCGAgcaagUGAUGGCCGAgCugauucggGUCgCCGaCGa -3' miRNA: 3'- -CGCU-----ACUACCGGCU-Guua-----CAG-GGC-GC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 7203 | 0.66 | 0.780387 |
Target: 5'- gGCGucaAUGGUGGCCG-CGGUGcugaCCCGg- -3' miRNA: 3'- -CGC---UACUACCGGCuGUUACa---GGGCgc -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 826 | 0.66 | 0.780387 |
Target: 5'- cGCGAcgacggccUGuacgcGGCCGACAuguucgcaAUGucgaUCCCGCGg -3' miRNA: 3'- -CGCU--------ACua---CCGGCUGU--------UAC----AGGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 41238 | 0.66 | 0.760121 |
Target: 5'- cGCGGUGcAUGGCggCGACAagGUCgugaCGCu -3' miRNA: 3'- -CGCUAC-UACCG--GCUGUuaCAGg---GCGc -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 17379 | 0.66 | 0.760121 |
Target: 5'- aGCGAccuagucAUGGCCGAaau--UCCCGCGa -3' miRNA: 3'- -CGCUac-----UACCGGCUguuacAGGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 9521 | 0.66 | 0.760121 |
Target: 5'- aCGAccGUGGCCGucaaGCGGUG-CCUGCGc -3' miRNA: 3'- cGCUacUACCGGC----UGUUACaGGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 12078 | 0.66 | 0.760121 |
Target: 5'- gGUGAUGAaacgGGCCgGugAcgGUCCCa-- -3' miRNA: 3'- -CGCUACUa---CCGG-CugUuaCAGGGcgc -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 49592 | 0.66 | 0.749785 |
Target: 5'- -gGgcGGUGGCCuGGCAGUGcUgCCGCu -3' miRNA: 3'- cgCuaCUACCGG-CUGUUAC-AgGGCGc -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 49785 | 0.66 | 0.749785 |
Target: 5'- uGCGGUGGcugcUGGCgcaguuCGACGAgagccucgCCCGCGg -3' miRNA: 3'- -CGCUACU----ACCG------GCUGUUaca-----GGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 1180 | 0.67 | 0.728764 |
Target: 5'- cCGAgaacgcGAUGGaCGACAugGUG-CCCGCGa -3' miRNA: 3'- cGCUa-----CUACCgGCUGU--UACaGGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 46000 | 0.67 | 0.728764 |
Target: 5'- aGCGG-GgcGaGUCGACGGUGaacugCCCGCGg -3' miRNA: 3'- -CGCUaCuaC-CGGCUGUUACa----GGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 4281 | 0.67 | 0.728764 |
Target: 5'- gGCGAUGGaGGCCGcggGCGAgcagcgCaCCGCGa -3' miRNA: 3'- -CGCUACUaCCGGC---UGUUaca---G-GGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 7983 | 0.67 | 0.718102 |
Target: 5'- cGCGcgGAgcaggGGCCGcaACAGUGacUCUCGUGc -3' miRNA: 3'- -CGCuaCUa----CCGGC--UGUUAC--AGGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 20959 | 0.67 | 0.685648 |
Target: 5'- cGCGGUGcgGGCuCGGCGAccagGUCgaGCa -3' miRNA: 3'- -CGCUACuaCCG-GCUGUUa---CAGggCGc -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 14801 | 0.67 | 0.685648 |
Target: 5'- --cAUGAUGGUCGACAccGaCCCGaCGg -3' miRNA: 3'- cgcUACUACCGGCUGUuaCaGGGC-GC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 5925 | 0.68 | 0.674712 |
Target: 5'- cGCGccGggGGCUGACAAcagGuUUCCGCGc -3' miRNA: 3'- -CGCuaCuaCCGGCUGUUa--C-AGGGCGC- -5' |
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12986 | 3' | -54.3 | NC_003387.1 | + | 48208 | 0.68 | 0.674712 |
Target: 5'- gGCGgcGgcGGCCGA-GGUGaCCCGCa -3' miRNA: 3'- -CGCuaCuaCCGGCUgUUACaGGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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