miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12986 3' -54.3 NC_003387.1 + 826 0.66 0.780387
Target:  5'- cGCGAcgacggccUGuacgcGGCCGACAuguucgcaAUGucgaUCCCGCGg -3'
miRNA:   3'- -CGCU--------ACua---CCGGCUGU--------UAC----AGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 1180 0.67 0.728764
Target:  5'- cCGAgaacgcGAUGGaCGACAugGUG-CCCGCGa -3'
miRNA:   3'- cGCUa-----CUACCgGCUGU--UACaGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 2523 0.7 0.543224
Target:  5'- cUGAUGAggGGCCGguguuccgcACGcgGUCgCCGCGg -3'
miRNA:   3'- cGCUACUa-CCGGC---------UGUuaCAG-GGCGC- -5'
12986 3' -54.3 NC_003387.1 + 3738 0.69 0.597617
Target:  5'- cGCGAUcGAcGGCCG-C-AUG-CCCGCGu -3'
miRNA:   3'- -CGCUA-CUaCCGGCuGuUACaGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 4281 0.67 0.728764
Target:  5'- gGCGAUGGaGGCCGcggGCGAgcagcgCaCCGCGa -3'
miRNA:   3'- -CGCUACUaCCGGC---UGUUaca---G-GGCGC- -5'
12986 3' -54.3 NC_003387.1 + 5925 0.68 0.674712
Target:  5'- cGCGccGggGGCUGACAAcagGuUUCCGCGc -3'
miRNA:   3'- -CGCuaCuaCCGGCUGUUa--C-AGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 6684 0.66 0.790294
Target:  5'- -aGGUGAUuGCCGACAg---CUCGCGg -3'
miRNA:   3'- cgCUACUAcCGGCUGUuacaGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 7203 0.66 0.780387
Target:  5'- gGCGucaAUGGUGGCCG-CGGUGcugaCCCGg- -3'
miRNA:   3'- -CGC---UACUACCGGCuGUUACa---GGGCgc -5'
12986 3' -54.3 NC_003387.1 + 7983 0.67 0.718102
Target:  5'- cGCGcgGAgcaggGGCCGcaACAGUGacUCUCGUGc -3'
miRNA:   3'- -CGCuaCUa----CCGGC--UGUUAC--AGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 9521 0.66 0.760121
Target:  5'- aCGAccGUGGCCGucaaGCGGUG-CCUGCGc -3'
miRNA:   3'- cGCUacUACCGGC----UGUUACaGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 11471 0.71 0.50091
Target:  5'- gGCGcucaaguucAUGGCCGACAAUGcCUCGUGg -3'
miRNA:   3'- -CGCuac------UACCGGCUGUUACaGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 12078 0.66 0.760121
Target:  5'- gGUGAUGAaacgGGCCgGugAcgGUCCCa-- -3'
miRNA:   3'- -CGCUACUa---CCGG-CugUuaCAGGGcgc -5'
12986 3' -54.3 NC_003387.1 + 12570 0.71 0.460111
Target:  5'- aCGAUcGGgccGCCGACGGUGUCgCCGUGg -3'
miRNA:   3'- cGCUA-CUac-CGGCUGUUACAG-GGCGC- -5'
12986 3' -54.3 NC_003387.1 + 14801 0.67 0.685648
Target:  5'- --cAUGAUGGUCGACAccGaCCCGaCGg -3'
miRNA:   3'- cgcUACUACCGGCUGUuaCaGGGC-GC- -5'
12986 3' -54.3 NC_003387.1 + 17072 0.68 0.65273
Target:  5'- cGCGGUcGA-GGUCGGcCAGUG-CCCGCc -3'
miRNA:   3'- -CGCUA-CUaCCGGCU-GUUACaGGGCGc -5'
12986 3' -54.3 NC_003387.1 + 17379 0.66 0.760121
Target:  5'- aGCGAccuagucAUGGCCGAaau--UCCCGCGa -3'
miRNA:   3'- -CGCUac-----UACCGGCUguuacAGGGCGC- -5'
12986 3' -54.3 NC_003387.1 + 18313 0.66 0.784369
Target:  5'- gGCGGUGGcgcccggcaacggcgUGGCCGuCG-UG-CCCGCc -3'
miRNA:   3'- -CGCUACU---------------ACCGGCuGUuACaGGGCGc -5'
12986 3' -54.3 NC_003387.1 + 20959 0.67 0.685648
Target:  5'- cGCGGUGcgGGCuCGGCGAccagGUCgaGCa -3'
miRNA:   3'- -CGCUACuaCCG-GCUGUUa---CAGggCGc -5'
12986 3' -54.3 NC_003387.1 + 22129 0.74 0.325007
Target:  5'- cGUGAUG-UGGCCGACGua--CCCGCa -3'
miRNA:   3'- -CGCUACuACCGGCUGUuacaGGGCGc -5'
12986 3' -54.3 NC_003387.1 + 23360 0.66 0.780387
Target:  5'- cGCGAgcaagUGAUGGCCGAgCugauucggGUCgCCGaCGa -3'
miRNA:   3'- -CGCU-----ACUACCGGCU-Guua-----CAG-GGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.