miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12986 5' -60.1 NC_003387.1 + 25462 0.66 0.517457
Target:  5'- gCCCGCGucGCGGCucaUGCGGcGcAUCCUGu -3'
miRNA:   3'- -GGGCGC--UGCUGcg-GCGCCuC-UAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 25056 0.66 0.517457
Target:  5'- aCCCGCGGCuGACgGCCaGCGGc-GUCUa- -3'
miRNA:   3'- -GGGCGCUG-CUG-CGG-CGCCucUAGGac -5'
12986 5' -60.1 NC_003387.1 + 39726 0.66 0.517457
Target:  5'- gCUGCuGACGACGCaGCGcGAGAUUa-- -3'
miRNA:   3'- gGGCG-CUGCUGCGgCGC-CUCUAGgac -5'
12986 5' -60.1 NC_003387.1 + 15259 0.66 0.517457
Target:  5'- gCCGcCGAgaagucgguCGACGCCGaGGAGAUgUUGc -3'
miRNA:   3'- gGGC-GCU---------GCUGCGGCgCCUCUAgGAC- -5'
12986 5' -60.1 NC_003387.1 + 34407 0.66 0.517457
Target:  5'- aCCaGCGACGACGCacuCGCcGGcauUCCUGc -3'
miRNA:   3'- gGG-CGCUGCUGCG---GCG-CCucuAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 50185 0.66 0.517456
Target:  5'- gCCGCGGCGAcCGCgUGCGGAacaCCg- -3'
miRNA:   3'- gGGCGCUGCU-GCG-GCGCCUcuaGGac -5'
12986 5' -60.1 NC_003387.1 + 21963 0.66 0.511439
Target:  5'- gUCUGCGGCGcuguucaacuacgguGCGCC-CGGuGAUCCc- -3'
miRNA:   3'- -GGGCGCUGC---------------UGCGGcGCCuCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 23297 0.66 0.507443
Target:  5'- aCCGCG-CGGgcCGCUGCGGcGGccuccUCCUGc -3'
miRNA:   3'- gGGCGCuGCU--GCGGCGCCuCU-----AGGAC- -5'
12986 5' -60.1 NC_003387.1 + 4479 0.66 0.507443
Target:  5'- gCCCGCcGCGAaggccgaGcCCGCGGAGGcCCc- -3'
miRNA:   3'- -GGGCGcUGCUg------C-GGCGCCUCUaGGac -5'
12986 5' -60.1 NC_003387.1 + 1692 0.66 0.497512
Target:  5'- aCCGCGGCGGCgGUCGacuGGAUCgCUGa -3'
miRNA:   3'- gGGCGCUGCUG-CGGCgccUCUAG-GAC- -5'
12986 5' -60.1 NC_003387.1 + 31439 0.66 0.497512
Target:  5'- gCCuCGACGACGaCGCGGuGcgCCa- -3'
miRNA:   3'- gGGcGCUGCUGCgGCGCCuCuaGGac -5'
12986 5' -60.1 NC_003387.1 + 36729 0.66 0.48767
Target:  5'- gCCCgGCcuCGACGCCGUcuGcGAGcgCCUGg -3'
miRNA:   3'- -GGG-CGcuGCUGCGGCG--C-CUCuaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 32556 0.66 0.48767
Target:  5'- uCCgGUGGCGA-GCCGaCGGuGG-CCUGa -3'
miRNA:   3'- -GGgCGCUGCUgCGGC-GCCuCUaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 37317 0.66 0.47792
Target:  5'- aCCGCGcCGACguGCCGUGGAcGAgCCc- -3'
miRNA:   3'- gGGCGCuGCUG--CGGCGCCU-CUaGGac -5'
12986 5' -60.1 NC_003387.1 + 40019 0.66 0.468267
Target:  5'- cCCCGCG--GGCGCuCGCGcGGGaAUCCa- -3'
miRNA:   3'- -GGGCGCugCUGCG-GCGC-CUC-UAGGac -5'
12986 5' -60.1 NC_003387.1 + 35258 0.66 0.468267
Target:  5'- gCCGaCGACaacuGGCGCCGCGGguacgacuGGcgCCUa -3'
miRNA:   3'- gGGC-GCUG----CUGCGGCGCC--------UCuaGGAc -5'
12986 5' -60.1 NC_003387.1 + 4244 0.67 0.458716
Target:  5'- gCCGCGACGgccucacuACGCCGCaaGAGAUUUc- -3'
miRNA:   3'- gGGCGCUGC--------UGCGGCGc-CUCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 15175 0.67 0.449269
Target:  5'- gCCCGuCGGCGACGaUCGCGGcuuGAacgCCg- -3'
miRNA:   3'- -GGGC-GCUGCUGC-GGCGCCu--CUa--GGac -5'
12986 5' -60.1 NC_003387.1 + 32877 0.67 0.449269
Target:  5'- gCCGCGuCGGCGUCGuCGaGAGAUUg-- -3'
miRNA:   3'- gGGCGCuGCUGCGGC-GC-CUCUAGgac -5'
12986 5' -60.1 NC_003387.1 + 44621 0.67 0.430704
Target:  5'- gCCGUGGCGcgaGCguguggcccugGCCGCGGccucggcGAUCCUGg -3'
miRNA:   3'- gGGCGCUGC---UG-----------CGGCGCCu------CUAGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.