miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12986 5' -60.1 NC_003387.1 + 44621 0.67 0.430704
Target:  5'- gCCGUGGCGcgaGCguguggcccugGCCGCGGccucggcGAUCCUGg -3'
miRNA:   3'- gGGCGCUGC---UG-----------CGGCGCCu------CUAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 10746 0.67 0.430703
Target:  5'- aCCGCGGCGGCcuCCGCGcGcAGcUCCUc -3'
miRNA:   3'- gGGCGCUGCUGc-GGCGC-C-UCuAGGAc -5'
12986 5' -60.1 NC_003387.1 + 878 0.68 0.40372
Target:  5'- aCCGCGgcaGCGACGCCGgucaGGAucUUCUGc -3'
miRNA:   3'- gGGCGC---UGCUGCGGCg---CCUcuAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 51962 0.68 0.394966
Target:  5'- gCCCGaCGuCGcUGCCGCGGuGGccgaccgcaUCCUGg -3'
miRNA:   3'- -GGGC-GCuGCuGCGGCGCCuCU---------AGGAC- -5'
12986 5' -60.1 NC_003387.1 + 36808 0.68 0.394966
Target:  5'- aCCGCGACG-UGCUucacgauccuGCGuGAGAUCCc- -3'
miRNA:   3'- gGGCGCUGCuGCGG----------CGC-CUCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 49820 0.68 0.386336
Target:  5'- gCCCGCGGCc-UGCCGCGcccggcgagcGAGuUCCUGc -3'
miRNA:   3'- -GGGCGCUGcuGCGGCGC----------CUCuAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 18607 0.68 0.386336
Target:  5'- aCCGCGAcguCGACGCCGCc--GAUCUg- -3'
miRNA:   3'- gGGCGCU---GCUGCGGCGccuCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 37622 0.68 0.386336
Target:  5'- cCCCGuUGACGcCGauCCGCGGGGGcUCCa- -3'
miRNA:   3'- -GGGC-GCUGCuGC--GGCGCCUCU-AGGac -5'
12986 5' -60.1 NC_003387.1 + 21811 0.68 0.377831
Target:  5'- cUCgGCGAgCGACGCCGUGGcGA-CCa- -3'
miRNA:   3'- -GGgCGCU-GCUGCGGCGCCuCUaGGac -5'
12986 5' -60.1 NC_003387.1 + 3171 0.68 0.376987
Target:  5'- aUCCGCGGaGGCccucgcaGCCGCGGAGG-CCa- -3'
miRNA:   3'- -GGGCGCUgCUG-------CGGCGCCUCUaGGac -5'
12986 5' -60.1 NC_003387.1 + 6892 0.68 0.369453
Target:  5'- cUCCGCGGCGuCGUCGCGGg---CCa- -3'
miRNA:   3'- -GGGCGCUGCuGCGGCGCCucuaGGac -5'
12986 5' -60.1 NC_003387.1 + 46639 0.69 0.345091
Target:  5'- gCCUGcCGACGACGCCcCGGcGGUCg-- -3'
miRNA:   3'- -GGGC-GCUGCUGCGGcGCCuCUAGgac -5'
12986 5' -60.1 NC_003387.1 + 27145 0.69 0.34509
Target:  5'- gCCCGCcgggguCGGCGCCGCcGGGGAaCgUGu -3'
miRNA:   3'- -GGGCGcu----GCUGCGGCG-CCUCUaGgAC- -5'
12986 5' -60.1 NC_003387.1 + 12458 0.69 0.33723
Target:  5'- gCUgGCGGCGGCcugGCCGCGGg---CCUGg -3'
miRNA:   3'- -GGgCGCUGCUG---CGGCGCCucuaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 11828 0.69 0.332577
Target:  5'- gCCGCGAUcgcggccuugauuagGuCGCCGCGGAaAUCCg- -3'
miRNA:   3'- gGGCGCUG---------------CuGCGGCGCCUcUAGGac -5'
12986 5' -60.1 NC_003387.1 + 34510 0.69 0.329501
Target:  5'- gCCGCuGCGGCGCCGC---GAUCCUc -3'
miRNA:   3'- gGGCGcUGCUGCGGCGccuCUAGGAc -5'
12986 5' -60.1 NC_003387.1 + 32719 0.69 0.328735
Target:  5'- -aCGUGAggucgaaCGGCGCCGCGGAGAacggCCc- -3'
miRNA:   3'- ggGCGCU-------GCUGCGGCGCCUCUa---GGac -5'
12986 5' -60.1 NC_003387.1 + 26036 0.69 0.321904
Target:  5'- aCCCGcCGACGGCGCCGCacaucGAGuaCCa- -3'
miRNA:   3'- -GGGC-GCUGCUGCGGCGc----CUCuaGGac -5'
12986 5' -60.1 NC_003387.1 + 27538 0.69 0.321904
Target:  5'- gCCGCGGCGGCGgCGCcGGGGccaCCg- -3'
miRNA:   3'- gGGCGCUGCUGCgGCG-CCUCua-GGac -5'
12986 5' -60.1 NC_003387.1 + 42391 0.69 0.31965
Target:  5'- gCCGUauCGACGCCGCGGcuGAuucccuugcccgcgUCCUGg -3'
miRNA:   3'- gGGCGcuGCUGCGGCGCCu-CU--------------AGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.