miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12986 5' -60.1 NC_003387.1 + 507 0.74 0.147947
Target:  5'- gCCCGCGugG-CGaCCGCGGuugaAGAUCCc- -3'
miRNA:   3'- -GGGCGCugCuGC-GGCGCC----UCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 878 0.68 0.40372
Target:  5'- aCCGCGgcaGCGACGCCGgucaGGAucUUCUGc -3'
miRNA:   3'- gGGCGC---UGCUGCGGCg---CCUcuAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 1205 0.75 0.143333
Target:  5'- gCCCGCGACGaACGCgGCGccuaacccgcuGAUCCUGc -3'
miRNA:   3'- -GGGCGCUGC-UGCGgCGCcu---------CUAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 1692 0.66 0.497512
Target:  5'- aCCGCGGCGGCgGUCGacuGGAUCgCUGa -3'
miRNA:   3'- gGGCGCUGCUG-CGGCgccUCUAG-GAC- -5'
12986 5' -60.1 NC_003387.1 + 2540 0.76 0.116425
Target:  5'- uUCCGCacGCGGuCGCCGCGGcAGAUCCUc -3'
miRNA:   3'- -GGGCGc-UGCU-GCGGCGCC-UCUAGGAc -5'
12986 5' -60.1 NC_003387.1 + 3171 0.68 0.376987
Target:  5'- aUCCGCGGaGGCccucgcaGCCGCGGAGG-CCa- -3'
miRNA:   3'- -GGGCGCUgCUG-------CGGCGCCUCUaGGac -5'
12986 5' -60.1 NC_003387.1 + 4244 0.67 0.458716
Target:  5'- gCCGCGACGgccucacuACGCCGCaaGAGAUUUc- -3'
miRNA:   3'- gGGCGCUGC--------UGCGGCGc-CUCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 4479 0.66 0.507443
Target:  5'- gCCCGCcGCGAaggccgaGcCCGCGGAGGcCCc- -3'
miRNA:   3'- -GGGCGcUGCUg------C-GGCGCCUCUaGGac -5'
12986 5' -60.1 NC_003387.1 + 6892 0.68 0.369453
Target:  5'- cUCCGCGGCGuCGUCGCGGg---CCa- -3'
miRNA:   3'- -GGGCGCUGCuGCGGCGCCucuaGGac -5'
12986 5' -60.1 NC_003387.1 + 10650 0.71 0.255631
Target:  5'- aCCCGCaGcACGcgcgccaggucguacACGCCGCGGucGAUCUUGg -3'
miRNA:   3'- -GGGCG-C-UGC---------------UGCGGCGCCu-CUAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 10746 0.67 0.430703
Target:  5'- aCCGCGGCGGCcuCCGCGcGcAGcUCCUc -3'
miRNA:   3'- gGGCGCUGCUGc-GGCGC-C-UCuAGGAc -5'
12986 5' -60.1 NC_003387.1 + 11828 0.69 0.332577
Target:  5'- gCCGCGAUcgcggccuugauuagGuCGCCGCGGAaAUCCg- -3'
miRNA:   3'- gGGCGCUG---------------CuGCGGCGCCUcUAGGac -5'
12986 5' -60.1 NC_003387.1 + 12458 0.69 0.33723
Target:  5'- gCUgGCGGCGGCcugGCCGCGGg---CCUGg -3'
miRNA:   3'- -GGgCGCUGCUG---CGGCGCCucuaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 12706 0.7 0.279079
Target:  5'- uCCCGCG-CGAgCGcCCGCGGGGcUCUa- -3'
miRNA:   3'- -GGGCGCuGCU-GC-GGCGCCUCuAGGac -5'
12986 5' -60.1 NC_003387.1 + 15101 0.72 0.201996
Target:  5'- cCCCGCGGauCGGCGUCaaCGGGGcgCCUGa -3'
miRNA:   3'- -GGGCGCU--GCUGCGGc-GCCUCuaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 15175 0.67 0.449269
Target:  5'- gCCCGuCGGCGACGaUCGCGGcuuGAacgCCg- -3'
miRNA:   3'- -GGGC-GCUGCUGC-GGCGCCu--CUa--GGac -5'
12986 5' -60.1 NC_003387.1 + 15259 0.66 0.517457
Target:  5'- gCCGcCGAgaagucgguCGACGCCGaGGAGAUgUUGc -3'
miRNA:   3'- gGGC-GCU---------GCUGCGGCgCCUCUAgGAC- -5'
12986 5' -60.1 NC_003387.1 + 16728 0.7 0.299901
Target:  5'- aUCgGCGACGACGCCGagucuGAGaAUCCg- -3'
miRNA:   3'- -GGgCGCUGCUGCGGCgc---CUC-UAGGac -5'
12986 5' -60.1 NC_003387.1 + 18607 0.68 0.386336
Target:  5'- aCCGCGAcguCGACGCCGCc--GAUCUg- -3'
miRNA:   3'- gGGCGCU---GCUGCGGCGccuCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 21749 0.72 0.229195
Target:  5'- aCUGCGAcaCGGUGCUGUGGGGAUuCCUGg -3'
miRNA:   3'- gGGCGCU--GCUGCGGCGCCUCUA-GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.