miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12986 5' -60.1 NC_003387.1 + 1205 0.75 0.143333
Target:  5'- gCCCGCGACGaACGCgGCGccuaacccgcuGAUCCUGc -3'
miRNA:   3'- -GGGCGCUGC-UGCGgCGCcu---------CUAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 18607 0.68 0.386336
Target:  5'- aCCGCGAcguCGACGCCGCc--GAUCUg- -3'
miRNA:   3'- gGGCGCU---GCUGCGGCGccuCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 36808 0.68 0.394966
Target:  5'- aCCGCGACG-UGCUucacgauccuGCGuGAGAUCCc- -3'
miRNA:   3'- gGGCGCUGCuGCGG----------CGC-CUCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 34407 0.66 0.517457
Target:  5'- aCCaGCGACGACGCacuCGCcGGcauUCCUGc -3'
miRNA:   3'- gGG-CGCUGCUGCG---GCG-CCucuAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 15101 0.72 0.201996
Target:  5'- cCCCGCGGauCGGCGUCaaCGGGGcgCCUGa -3'
miRNA:   3'- -GGGCGCU--GCUGCGGc-GCCUCuaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 30246 0.7 0.272399
Target:  5'- gCCCG-GuACGACGCCGCGGucGUCgaGu -3'
miRNA:   3'- -GGGCgC-UGCUGCGGCGCCucUAGgaC- -5'
12986 5' -60.1 NC_003387.1 + 42477 0.7 0.299901
Target:  5'- aCCG-GGCGAuccCGCCGUGgGAGAUCCc- -3'
miRNA:   3'- gGGCgCUGCU---GCGGCGC-CUCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 26036 0.69 0.321904
Target:  5'- aCCCGcCGACGGCGCCGCacaucGAGuaCCa- -3'
miRNA:   3'- -GGGC-GCUGCUGCGGCGc----CUCuaGGac -5'
12986 5' -60.1 NC_003387.1 + 45835 1.08 0.000456
Target:  5'- gCCCGCGACGACGCCGCGGAGAUCCUGc -3'
miRNA:   3'- -GGGCGCUGCUGCGGCGCCUCUAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 49820 0.68 0.386336
Target:  5'- gCCCGCGGCc-UGCCGCGcccggcgagcGAGuUCCUGc -3'
miRNA:   3'- -GGGCGCUGcuGCGGCGC----------CUCuAGGAC- -5'
12986 5' -60.1 NC_003387.1 + 46639 0.69 0.345091
Target:  5'- gCCUGcCGACGACGCCcCGGcGGUCg-- -3'
miRNA:   3'- -GGGC-GCUGCUGCGGcGCCuCUAGgac -5'
12986 5' -60.1 NC_003387.1 + 12458 0.69 0.33723
Target:  5'- gCUgGCGGCGGCcugGCCGCGGg---CCUGg -3'
miRNA:   3'- -GGgCGCUGCUG---CGGCGCCucuaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 507 0.74 0.147947
Target:  5'- gCCCGCGugG-CGaCCGCGGuugaAGAUCCc- -3'
miRNA:   3'- -GGGCGCugCuGC-GGCGCC----UCUAGGac -5'
12986 5' -60.1 NC_003387.1 + 3171 0.68 0.376987
Target:  5'- aUCCGCGGaGGCccucgcaGCCGCGGAGG-CCa- -3'
miRNA:   3'- -GGGCGCUgCUG-------CGGCGCCUCUaGGac -5'
12986 5' -60.1 NC_003387.1 + 30274 0.73 0.173099
Target:  5'- aCCGCGAgGccaACGCCGCGGcccGcgCCUGg -3'
miRNA:   3'- gGGCGCUgC---UGCGGCGCCu--CuaGGAC- -5'
12986 5' -60.1 NC_003387.1 + 34510 0.69 0.329501
Target:  5'- gCCGCuGCGGCGCCGC---GAUCCUc -3'
miRNA:   3'- gGGCGcUGCUGCGGCGccuCUAGGAc -5'
12986 5' -60.1 NC_003387.1 + 21811 0.68 0.377831
Target:  5'- cUCgGCGAgCGACGCCGUGGcGA-CCa- -3'
miRNA:   3'- -GGgCGCU-GCUGCGGCGCCuCUaGGac -5'
12986 5' -60.1 NC_003387.1 + 51962 0.68 0.394966
Target:  5'- gCCCGaCGuCGcUGCCGCGGuGGccgaccgcaUCCUGg -3'
miRNA:   3'- -GGGC-GCuGCuGCGGCGCCuCU---------AGGAC- -5'
12986 5' -60.1 NC_003387.1 + 43121 0.72 0.201481
Target:  5'- aCgGCG-CGGCGCCGCGGuGGugggcguUCCUGc -3'
miRNA:   3'- gGgCGCuGCUGCGGCGCCuCU-------AGGAC- -5'
12986 5' -60.1 NC_003387.1 + 16728 0.7 0.299901
Target:  5'- aUCgGCGACGACGCCGagucuGAGaAUCCg- -3'
miRNA:   3'- -GGgCGCUGCUGCGGCgc---CUC-UAGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.