miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12987 3' -57.2 NC_003387.1 + 19321 0.66 0.59442
Target:  5'- aACGGccucGCG-CGuGAAUGUGcCUGCGGCGGc -3'
miRNA:   3'- -UGCC----CGCaGC-CUUGUAC-GACGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 26574 0.66 0.59442
Target:  5'- uGCGGGCGgugcCGG-GCAUGCUGgCucguGCuGa -3'
miRNA:   3'- -UGCCCGCa---GCCuUGUACGAC-Gu---CGuC- -5'
12987 3' -57.2 NC_003387.1 + 42062 0.66 0.59442
Target:  5'- cGCGGcGUGUacgaccUGGcgcGCGUGCUGCGGguGc -3'
miRNA:   3'- -UGCC-CGCA------GCCu--UGUACGACGUCguC- -5'
12987 3' -57.2 NC_003387.1 + 625 0.66 0.59442
Target:  5'- -aGGGCGagGGcAGCGUcgccGCcGCGGCAGc -3'
miRNA:   3'- ugCCCGCagCC-UUGUA----CGaCGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 23939 0.66 0.58349
Target:  5'- cGCGGuGUGcCaGuccCAUGCUGCAGCAc -3'
miRNA:   3'- -UGCC-CGCaGcCuu-GUACGACGUCGUc -5'
12987 3' -57.2 NC_003387.1 + 18404 0.66 0.5726
Target:  5'- gACGGGuCGgccgCGGGcagcGCggGCUGCucgGGCAGc -3'
miRNA:   3'- -UGCCC-GCa---GCCU----UGuaCGACG---UCGUC- -5'
12987 3' -57.2 NC_003387.1 + 52082 0.66 0.5726
Target:  5'- uCGGGCGUCGc----UGCcGCGGCGGc -3'
miRNA:   3'- uGCCCGCAGCcuuguACGaCGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 1002 0.66 0.540254
Target:  5'- cCGGG-GUCGGAugc-GCUGCGGCc- -3'
miRNA:   3'- uGCCCgCAGCCUuguaCGACGUCGuc -5'
12987 3' -57.2 NC_003387.1 + 8769 0.67 0.529605
Target:  5'- uGCGGGCcuUCGc--CGUGCgGCGGCGGg -3'
miRNA:   3'- -UGCCCGc-AGCcuuGUACGaCGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 52354 0.67 0.529605
Target:  5'- gAUGGGCG-CGGAACc-GCUcGC-GCAGa -3'
miRNA:   3'- -UGCCCGCaGCCUUGuaCGA-CGuCGUC- -5'
12987 3' -57.2 NC_003387.1 + 40332 0.67 0.519034
Target:  5'- -aGGGCGaaaugCGGAAa--GCcgUGCAGCAGg -3'
miRNA:   3'- ugCCCGCa----GCCUUguaCG--ACGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 49604 0.67 0.508547
Target:  5'- cCGGGCugaucugCGcGAccaucgccACGUGCUGCAGCAu -3'
miRNA:   3'- uGCCCGca-----GC-CU--------UGUACGACGUCGUc -5'
12987 3' -57.2 NC_003387.1 + 20168 0.67 0.508547
Target:  5'- -aGGGCGUCGaGGGCGcgguugaugcgcUGCUGCGccucGCAc -3'
miRNA:   3'- ugCCCGCAGC-CUUGU------------ACGACGU----CGUc -5'
12987 3' -57.2 NC_003387.1 + 19758 0.67 0.508547
Target:  5'- gGCGGccuCGcCGGaAACAUGCUGCAGgAc -3'
miRNA:   3'- -UGCCc--GCaGCC-UUGUACGACGUCgUc -5'
12987 3' -57.2 NC_003387.1 + 4277 0.67 0.49815
Target:  5'- cGCGGGCGaUGGAggccGCggGCgaGCAGCGc -3'
miRNA:   3'- -UGCCCGCaGCCU----UGuaCGa-CGUCGUc -5'
12987 3' -57.2 NC_003387.1 + 42806 0.67 0.487851
Target:  5'- -aGGGCGUCGaucACGUG-UGCgAGCAGg -3'
miRNA:   3'- ugCCCGCAGCcu-UGUACgACG-UCGUC- -5'
12987 3' -57.2 NC_003387.1 + 30249 0.68 0.477652
Target:  5'- cCGGGuCGUCGGggUcgGCgccgggGUcgGGCAGc -3'
miRNA:   3'- uGCCC-GCAGCCuuGuaCGa-----CG--UCGUC- -5'
12987 3' -57.2 NC_003387.1 + 33964 0.68 0.467559
Target:  5'- cCGGG-GUCGGGuaugaGC-UGCcGCAGCGGg -3'
miRNA:   3'- uGCCCgCAGCCU-----UGuACGaCGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 42731 0.68 0.457578
Target:  5'- cGCGGGaacggGUCGGGuGCGccCUGCGGCGGa -3'
miRNA:   3'- -UGCCCg----CAGCCU-UGUacGACGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 28207 0.68 0.447711
Target:  5'- --aGGUGgCGGAACggGCUGCGGCuGa -3'
miRNA:   3'- ugcCCGCaGCCUUGuaCGACGUCGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.